# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mi0A 65 8.92e-18 d.15.7.1 79135 2gi9A 56 4.11e-17 2on8A 56 4.43e-17 1pgx 83 4.64e-17 1mhxA 65 4.76e-17 d.15.7.1 79134 2igd 61 5.96e-17 2qmtA 56 6.06e-17 2igdA 61 6.84e-17 d.15.7.1 37821 2b7eA 59 0.4763 1cd8 114 2.148 1qi9A 556 2.274 a.111.1.2 19053 1ohvA 472 2.533 c.67.1.4 93031 1u55A 188 3.053 d.278.1.1 107677 1nrwA 288 3.610 c.108.1.10 86128 1o6gA 710 6.425 b.69.7.1,c.69.1.4 81087,81088 3cncA 220 7.386 1ojjA 402 10.14 b.29.1.10 93130 1zupA 315 10.26 c.55.3.11 125681 2qazA 128 10.66 1d0cA 444 12.48 d.174.1.1 64769 1vg0A 650 12.53 c.3.1.3,d.16.1.6 108596,108597 2cjjA 93 12.86 a.4.1.3 130540 1h7sA 365 13.55 d.14.1.3,d.122.1.2 65705,65706 1ed5A 444 15.20 d.174.1.1 42530 1kmoA 774 15.23 f.4.3.3 72753 2inuA 410 15.30 1pieA 419 15.30 d.14.1.5,d.58.26.7 94706,94707 2qsbA 89 15.98 1lrzA 426 17.12 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1otcA 495 17.92 b.40.4.3,b.40.4.3,b.40.4.3 25307,25308,25309 2pbqA 178 19.11 1xzzA 246 20.06 1t17A 148 20.59 d.129.3.6 112215 1xviA 275 20.68 c.108.1.10 116088 1qciA 262 20.89 d.165.1.1 42201 1ay0A 680 21.68 c.36.1.10,c.36.1.6,c.48.1.1 31823,31824,33100 2jesA 503 22.71 2qzgA 94 22.72 3cpgA 282 22.78 1xpmA 396 23.87 c.95.1.2,c.95.1.2 115759,115760 1d8vA 263 24.81 d.165.1.1 42193 2o09A 189 25.14 2freA 200 26.40 d.90.1.1 133985 2airB 153 26.61 d.58.2.1,g.41.7.1 126832,126833 2q87A 110 29.19 1ec7A 446 29.53 c.1.11.2,d.54.1.1 29218,38862 1uh5A 329 29.84 c.2.1.2 107840 1po0A 751 32.38 f.4.3.3 94960 2cn3A 737 32.58 1oq1A 223 33.01 b.29.1.17 93408 3thiA 371 34.21 c.94.1.1 35792 1a78A 134 34.23 b.29.1.3 24212 1qqcA 773 34.65 c.55.3.5,e.8.1.1 33724,43013 1vh4A 435 36.36 b.80.6.1 100640 1rzjG 321 37.88 d.172.1.1 98200 2qklA 127 39.67 1qfhA 212 39.81 b.1.18.10,b.1.18.10 21893,21894 2c4mA 796 39.90 1uypA 432 41.16 b.29.1.19,b.67.2.3 100176,100177 2cfcA 250 41.38 2pgeA 377 41.44 1q6oA 216 42.17 c.1.2.3 95986 2rmcA 182 42.89 b.62.1.1 27491 2akaB 299 43.50 c.37.1.8 126914 1bgcA 174 44.94 a.26.1.1 16822 2hz5A 106 46.78 1cem 363 46.91 1ki0A 253 47.99 g.14.1.1,g.14.1.1,g.14.1.1 72493,72494,72495 2dnjA 260 48.30 d.151.1.1 41790 2bm0A 691 50.31 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1gw1A 376 51.68 c.1.8.3 76361 1qs0A 407 52.34 c.36.1.11 31829 2yziA 138 52.91 1iznB 277 53.07 e.43.1.2 83848 1j0aA 325 53.22 c.79.1.1 83871 1itxA 419 53.28 c.1.8.5,d.26.3.1 71425,71426 1p22A 435 55.29 a.158.1.1,b.69.4.1 87715,87716 2fokA 579 55.45 a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 2a4hA 126 55.64 c.47.1.23 126155 1dquA 538 57.12 c.1.12.7 29314 1om4A 422 58.13 d.174.1.1 87067 1v73A 342 58.29 2ob9A 130 58.99 1rtu 114 63.20 2vqeE 162 64.26 2nl9A 157 64.35 1exnA 290 66.19 a.60.7.1,c.120.1.2 18088,33358 1rl0A 255 66.23 d.165.1.1 111859 3b7fA 394 66.39 1ee9A 320 67.30 c.2.1.7,c.58.1.2 30288,33936 1yqtA 538 67.46 2i7hA 189 68.97 2nx9A 464 69.09 2ao3A 130 70.76 2nxbA 123 71.22 1oewA 329 71.74 b.50.1.2 86924 1hzfA 367 72.62 a.102.4.4 76731 1i9bA 217 72.86 b.96.1.1 62084 1bwwA 109 73.29 b.1.1.1 20518 1h32B 138 73.89 a.3.1.1 76620 1py5A 326 74.84 d.144.1.7 104389 1ndoA 449 75.37 b.33.1.2,d.129.3.3 24444,41323 1sltA 134 76.16 b.29.1.3 24186 2oo1A 113 77.08 1vqzA 341 77.29 d.224.1.3,d.104.1.3 120426,120427 1qcrJ 59 77.42 f.23.14.1 43679 2qc1B 212 78.11 1eeuA 114 80.43 b.1.1.1 20546 2nutA 769 80.73 1htyA 1015 81.84 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1sz6A 249 83.41 d.165.1.1 112171 2i4rA 102 84.26 1rlmA 271 86.54 c.108.1.10 111860 1v93A 296 87.57 c.1.23.1 100532 2dwwA 114 88.22 1rxwA 336 89.16 a.60.7.1,c.120.1.2 98059,98060