# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gi9A	56	4.74e-11		
2on8A	56	5.57e-11		
2qmtA	56	5.60e-11		
1pgx	83	5.69e-11		
1mhxA	65	5.73e-11	d.15.7.1	79134
1mi0A	65	6.02e-11	d.15.7.1	79135
2igd	61	6.03e-11		
2igdA	61	6.71e-11	d.15.7.1	37821
2b7eA	59	1.467		
1uzcA	71	23.96	a.159.2.1	100222
2qsbA	89	26.43		
2qzgA	94	33.26		
1ql3A	99	34.38	a.3.1.1	15822
1h8gA	95	34.58	b.109.1.1	65735
1b2iA	83	36.33	g.14.1.1	44640
1bwwA	109	39.40	b.1.1.1	20518
1eeuA	114	41.85	b.1.1.1	20546
2f15A	96	43.57		
2jh1A	246	46.40		
2f6eA	127	48.84		
1eeqA	114	49.22	b.1.1.1	20544
2i7hA	189	50.15		
1i71A	83	51.62	g.14.1.1	61864
2qklA	127	53.44		
1iznB	277	57.68	e.43.1.2	83848
1krnA	88	59.82	g.14.1.1	44629
1qfwM	108	59.90	b.1.1.1	20436
1cd8	114	62.51		
1a7nL	107	63.45	b.1.1.1	19940
2v05A	311	64.98		
1gvmA	136	67.52	b.109.1.1	70612
1i8kA	107	70.11	b.1.1.1	71130
1nijA	318	70.36	c.37.1.10,d.237.1.1	85741,85742
1pmlA	86	71.04	g.14.1.1	44632
3cjsA	60	75.51		
1j1xL	107	75.75	b.1.1.1	77064
3bm1A	183	76.69		
1ki0A	253	77.98	g.14.1.1,g.14.1.1,g.14.1.1	72493,72494,72495
1co6A	107	84.03	a.3.1.1	15894
1a2yA	107	84.07	b.1.1.1	19926
1kpsB	171	87.25	a.118.12.1	68787
1a7qL	106	87.29	b.1.1.1	19954
1g7jA	107	89.62	b.1.1.1	19932