# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2on8A	56	5.86e-11		
1pgx	83	6.09e-11		
2gi9A	56	6.30e-11		
1mi0A	65	6.40e-11	d.15.7.1	79135
2igd	61	6.44e-11		
2qmtA	56	6.70e-11		
1mhxA	65	6.90e-11	d.15.7.1	79134
2igdA	61	7.01e-11	d.15.7.1	37821
2b7eA	59	2.422		
2qsbA	89	20.28		
1b2iA	83	22.69	g.14.1.1	44640
2qzgA	94	25.69		
1ql3A	99	27.48	a.3.1.1	15822
1h8gA	95	28.99	b.109.1.1	65735
1i71A	83	29.28	g.14.1.1	61864
1eeuA	114	35.70	b.1.1.1	20546
1bwwA	109	37.22	b.1.1.1	20518
1krnA	88	37.64	g.14.1.1	44629
1uzcA	71	39.10	a.159.2.1	100222
1co6A	107	39.37	a.3.1.1	15894
1pmlA	86	39.89	g.14.1.1	44632
1eeqA	114	40.08	b.1.1.1	20544
2f6eA	127	40.16		
3cjsA	60	41.52		
2f15A	96	44.42		
1ki0A	253	49.67	g.14.1.1,g.14.1.1,g.14.1.1	72493,72494,72495
1i8kA	107	52.37	b.1.1.1	71130
1gvmA	136	58.36	b.109.1.1	70612
1wz4A	23	63.84		
2v05A	311	64.86		
1qfwM	108	66.85	b.1.1.1	20436
1a7nL	107	67.61	b.1.1.1	19940
1xg0A	76	68.63	d.184.1.1	115273
1mqkL	120	75.19	b.1.1.1	85054
2jh1A	246	76.74		
1a2yA	107	78.18	b.1.1.1	19926
1j1xL	107	79.55	b.1.1.1	77064
2pwwA	127	82.99		
2nx9A	464	86.49		
1z0nA	96	86.68		
1a7oL	106	87.20	b.1.1.1	19942
1g7jA	107	87.46	b.1.1.1	19932
2jesA	503	89.21