# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qmtA 56 4.98e-11 1pgx 83 5.01e-11 2igd 61 5.01e-11 1mhxA 65 5.27e-11 d.15.7.1 79134 2igdA 61 5.35e-11 d.15.7.1 37821 2on8A 56 5.35e-11 2gi9A 56 5.68e-11 1mi0A 65 7.12e-11 d.15.7.1 79135 2b7eA 59 5.153 1eeuA 114 10.07 b.1.1.1 20546 1bwwA 109 10.30 b.1.1.1 20518 1i8kA 107 10.41 b.1.1.1 71130 1eeqA 114 12.54 b.1.1.1 20544 2qklA 127 15.38 1a7qL 106 16.57 b.1.1.1 19954 1dlfL 113 16.64 b.1.1.1 20382 1a2yA 107 17.30 b.1.1.1 19926 1g7jA 107 18.26 b.1.1.1 19932 2qzgA 94 18.37 1qfwM 108 18.43 b.1.1.1 20436 1a7nL 107 20.07 b.1.1.1 19940 1j1xL 107 21.15 b.1.1.1 77064 2qsbA 89 21.80 1a7oL 106 22.37 b.1.1.1 19942 1mqkL 120 23.98 b.1.1.1 85054 1a7pL 107 25.15 b.1.1.1 19950 1a14L 104 27.48 b.1.1.1 20060 1ql3A 99 33.64 a.3.1.1 15822 1uacL 107 38.97 b.1.1.1 99133 1b0wA 108 39.29 b.1.1.1 20532 1j05A 111 44.07 b.1.1.1 90735 1mlbA 214 46.34 b.1.1.1,b.1.1.2 20050,21092 1ap2A 113 55.03 b.1.1.1 20182 1ncwL 219 55.27 b.1.1.1,b.1.1.2 85557,85558 1cd8 114 62.45 1b2iA 83 64.69 g.14.1.1 44640 1kcvL 214 65.64 b.1.1.1,b.1.1.2 72317,72318 1uzcA 71 66.91 a.159.2.1 100222 1a6wL 109 69.56 b.1.1.1 20252 1culA 217 71.14 d.58.29.1 39417 1rurL 217 72.66 b.1.1.1,b.1.1.2 97881,97882 1l7iL 214 73.70 b.1.1.1,b.1.1.2 73658,73659 1ab5A 125 74.22 c.23.1.1 31056 1n0xL 215 75.34 b.1.1.1,b.1.1.2 91532,91533 1mexL 213 77.34 b.1.1.1,b.1.1.2 91259,91260 2joqA 91 79.81 1dw0A 112 80.05 a.3.1.1 15911 1co6A 107 81.55 a.3.1.1 15894 1ngzA 213 82.88 b.1.1.1,b.1.1.2 80500,80501 1dqqA 214 82.99 b.1.1.1,b.1.1.2 20420,21390 1wgxA 73 83.57 a.4.1.3 114626 2if6A 186 83.64 2jc5A 259 84.18 1h8gA 95 85.56 b.109.1.1 65735 1gq8A 319 85.60 b.80.1.5 70350 3cjsA 60 89.98