# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mi0A	65	1.78e-09	d.15.7.1	79135
2on8A	56	2.39e-09		
2gi9A	56	2.48e-09		
2qmtA	56	3.65e-09		
2igdA	61	4.30e-09	d.15.7.1	37821
2igd	61	4.60e-09		
1pgx	83	4.78e-09		
1mhxA	65	5.06e-09	d.15.7.1	79134
1cqmA	101	3.414	d.58.14.1	39321
1ris	101	4.127		
1louA	101	5.966	d.58.14.1	39323
2gqpA	236	13.92	d.122.1.1	135513
2pa2A	151	15.89		
1s7iA	124	26.55	d.58.4.9	105353
1j75A	67	26.59	a.4.5.19	62673
2j5aA	110	28.76		
1vr7A	142	30.28	d.156.1.2	120443
1tluA	130	30.81	d.156.1.2	107139
1fx3A	169	32.35	d.33.1.1	38524
2hxwA	237	38.81		
1lcyA	325	40.90	b.36.1.4,b.47.1.1	73834,73835
1d0iA	156	40.91	c.23.13.1	31383
1bxm	99	41.39		
1gtzA	156	42.17	c.23.13.1	70539
3bjoA	103	42.88		
1vbuA	328	44.02	c.1.8.3	119963
1oaiA	59	46.03	a.5.2.3	81255
2jt1A	77	47.34		
1pn0A	665	47.70	c.3.1.2,c.47.1.10,d.16.1.2	94918,94919,94920
2ebeA	106	48.15		
1zpvA	91	55.03	d.58.18.7	125475
2aibA	98	57.76	a.134.1.1	126824
1vmbA	140	57.91	d.58.14.1	113672
2bgcA	238	60.66	a.4.5.4,b.82.3.3	128458,128459
1r6oC	106	61.59	d.45.1.2	118738
1c0wA	225	63.22	a.4.5.24,a.76.1.1,b.34.1.2	16211,18417,24455
1epaA	164	65.95	b.60.1.1	27128
1cs0A	1073	67.75	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18558,31487,31673,31674,41518,41519
1lriA	98	68.43	a.134.1.1	74223
2btvA	901	68.51	e.28.1.1	43376
1feuA	206	71.11	b.53.1.1	59801
1fohA	664	72.50	c.3.1.2,c.47.1.10,d.16.1.2	30381,33078,37900
2c8mA	262	72.78		
2cztA	167	72.93		
2posA	94	76.29		
1vgyA	393	77.98	c.56.5.4,d.58.19.1	100620,100621
2dyjA	95	79.46		
1ufmA	84	81.14	a.4.5.47	107816
1v9jA	113	81.16	d.52.6.1	100542
2cm4A	150	81.99		
1gm6A	175	84.49	b.60.1.1	70272
1fa0B	537	85.08	d.58.16.1,a.160.1.1,d.218.1.3	39336,75839,75840
2axoA	270	86.87	c.47.1.19	127496
2fygA	128	87.58	g.86.1.1	134369