# TARGET T0499 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0499.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.77849 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.011 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.007 0.009 0.002 0.002 0.001 0.001 0.001 0.354 0.060 0.145 0.362 2 T 0.004 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.011 0.019 0.004 0.009 0.004 0.003 0.002 0.293 0.103 0.110 0.402 3 Y 0.004 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.017 0.005 0.020 0.021 0.006 0.004 0.595 0.117 0.040 0.139 4 K 0.002 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.022 0.017 0.014 0.010 0.693 0.106 0.022 0.096 5 L 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.009 0.004 0.887 0.040 0.005 0.029 6 I 0.005 0.014 0.001 0.001 0.002 0.003 0.010 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.003 0.825 0.043 0.013 0.071 7 L 0.003 0.009 0.001 0.001 0.004 0.005 0.007 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.838 0.038 0.020 0.070 8 N 0.067 0.085 0.004 0.001 0.003 0.003 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.428 0.123 0.066 0.214 9 L 0.231 0.232 0.006 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.099 0.116 0.070 0.239 10 K 0.095 0.355 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.076 0.066 0.329 11 Q 0.109 0.464 0.006 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.041 0.045 0.291 12 A 0.097 0.464 0.015 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.054 0.048 0.282 13 K 0.127 0.615 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.017 0.042 0.025 0.156 14 E 0.077 0.589 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.002 0.001 0.001 0.001 0.027 0.034 0.031 0.228 15 E 0.029 0.576 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.001 0.055 0.036 0.032 0.257 16 A 0.061 0.603 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.042 0.029 0.200 17 I 0.113 0.613 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.038 0.028 0.159 18 K 0.076 0.352 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.068 0.078 0.051 0.363 19 E 0.065 0.410 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.123 0.071 0.043 0.277 20 A 0.065 0.274 0.013 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.094 0.080 0.076 0.389 21 V 0.017 0.056 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.104 0.535 0.055 0.225 22 D 0.049 0.481 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.312 0.027 0.108 23 A 0.028 0.811 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.030 0.020 0.097 24 G 0.014 0.770 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.051 0.019 0.128 25 T 0.018 0.921 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.028 0.004 0.025 26 A 0.009 0.963 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.003 0.011 27 E 0.005 0.959 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.002 0.012 28 K 0.014 0.932 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.003 0.027 29 Y 0.008 0.950 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.003 0.019 30 F 0.017 0.943 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.004 0.016 31 K 0.030 0.649 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.183 0.017 0.113 32 L 0.053 0.646 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.086 0.024 0.168 33 I 0.108 0.330 0.107 0.005 0.003 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.180 0.052 0.188 34 A 0.082 0.045 0.179 0.002 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.262 0.059 0.347 35 N 0.478 0.012 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.027 0.032 0.439 36 A 0.046 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.012 0.057 0.872 37 K 0.005 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.010 0.101 0.846 38 T 0.016 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.050 0.079 0.805 39 V 0.097 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.019 0.013 0.001 0.001 0.001 0.001 0.001 0.077 0.084 0.082 0.594 40 E 0.017 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.002 0.137 0.041 0.124 0.661 41 G 0.009 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.009 0.011 0.025 0.010 0.501 0.058 0.061 0.295 42 V 0.014 0.019 0.001 0.001 0.006 0.005 0.014 0.004 0.001 0.002 0.001 0.001 0.002 0.005 0.035 0.016 0.305 0.054 0.079 0.436 43 W 0.010 0.014 0.001 0.001 0.021 0.006 0.015 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.496 0.039 0.066 0.313 44 T 0.121 0.064 0.003 0.001 0.011 0.003 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.258 0.114 0.068 0.343 45 Y 0.232 0.059 0.010 0.001 0.006 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.156 0.138 0.072 0.320 46 K 0.148 0.067 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.123 0.083 0.100 0.472 47 D 0.067 0.010 0.007 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.156 0.207 0.113 0.432 48 E 0.020 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.468 0.109 0.078 0.291 49 I 0.008 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.009 0.003 0.007 0.002 0.002 0.001 0.001 0.001 0.148 0.063 0.107 0.643 50 K 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.008 0.002 0.008 0.006 0.003 0.003 0.761 0.047 0.021 0.132 51 T 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.003 0.001 0.005 0.004 0.005 0.004 0.249 0.040 0.081 0.602 52 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.903 0.012 0.010 0.063 53 T 0.004 0.001 0.001 0.001 0.003 0.001 0.005 0.003 0.001 0.001 0.001 0.001 0.002 0.001 0.005 0.004 0.387 0.042 0.058 0.482 54 V 0.004 0.001 0.001 0.001 0.007 0.002 0.007 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.462 0.027 0.053 0.424 55 T 0.030 0.003 0.001 0.001 0.007 0.002 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.203 0.055 0.072 0.614 56 E 0.033 0.004 0.001 0.001 0.004 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.154 0.033 0.084 0.680