# TARGET T0499 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0499.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.77849 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.041 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.090 0.014 0.113 0.732 2 T 0.056 0.002 0.004 0.001 0.005 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.152 0.009 0.092 0.671 3 Y 0.012 0.002 0.001 0.001 0.012 0.007 0.005 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.742 0.004 0.048 0.160 4 K 0.004 0.001 0.001 0.001 0.038 0.015 0.018 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.774 0.002 0.036 0.101 5 L 0.001 0.001 0.001 0.001 0.003 0.004 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.896 0.001 0.015 0.060 6 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.947 0.001 0.009 0.030 7 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.004 0.002 0.952 0.001 0.009 0.023 8 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.002 0.002 0.874 0.001 0.034 0.078 9 L 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.002 0.002 0.001 0.001 0.001 0.002 0.001 0.647 0.002 0.066 0.258 10 K 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.125 0.004 0.380 0.477 11 Q 0.044 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.080 0.013 0.230 0.624 12 A 0.157 0.043 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.104 0.017 0.104 0.566 13 K 0.061 0.114 0.005 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.081 0.011 0.200 0.520 14 E 0.072 0.135 0.006 0.001 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.037 0.017 0.115 0.607 15 E 0.064 0.380 0.004 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.015 0.083 0.408 16 A 0.079 0.556 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.013 0.042 0.251 17 I 0.024 0.762 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.067 0.005 0.018 0.115 18 K 0.024 0.779 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.068 0.006 0.012 0.105 19 E 0.031 0.815 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.012 0.010 0.103 20 A 0.098 0.770 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.019 0.005 0.069 21 V 0.063 0.722 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.068 0.014 0.022 0.093 22 D 0.072 0.467 0.052 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.032 0.065 0.283 23 A 0.084 0.411 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.061 0.019 0.029 0.385 24 G 0.010 0.218 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.004 0.192 0.568 25 T 0.037 0.106 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.597 0.238 26 A 0.016 0.897 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.072 27 E 0.012 0.905 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.067 28 K 0.011 0.911 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.011 0.061 29 Y 0.006 0.973 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.017 30 F 0.003 0.989 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 31 K 0.002 0.990 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.005 32 L 0.006 0.983 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.006 33 I 0.017 0.968 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.005 34 A 0.016 0.968 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.001 0.006 35 N 0.037 0.857 0.007 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.040 0.006 0.040 36 A 0.221 0.490 0.018 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.102 0.011 0.140 37 K 0.200 0.196 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.111 0.083 0.371 38 T 0.246 0.029 0.102 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.140 0.115 0.336 39 V 0.099 0.030 0.133 0.013 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.070 0.013 0.182 0.454 40 E 0.006 0.008 0.004 0.005 0.021 0.003 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.309 0.003 0.098 0.531 41 G 0.010 0.010 0.002 0.003 0.013 0.021 0.031 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.352 0.007 0.053 0.483 42 V 0.095 0.009 0.009 0.001 0.001 0.005 0.019 0.011 0.001 0.001 0.001 0.001 0.002 0.005 0.005 0.006 0.351 0.010 0.131 0.339 43 W 0.013 0.009 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.007 0.008 0.004 0.003 0.460 0.003 0.053 0.429 44 T 0.030 0.013 0.003 0.001 0.003 0.001 0.002 0.003 0.003 0.003 0.014 0.002 0.014 0.008 0.005 0.003 0.468 0.008 0.108 0.308 45 Y 0.015 0.014 0.002 0.001 0.001 0.001 0.001 0.001 0.015 0.010 0.004 0.001 0.002 0.001 0.002 0.002 0.419 0.003 0.079 0.425 46 K 0.016 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.255 0.004 0.161 0.520 47 D 0.062 0.032 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.113 0.021 0.136 0.628 48 E 0.303 0.052 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.145 0.028 0.092 0.371 49 I 0.254 0.091 0.020 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.189 0.025 0.145 0.267 50 K 0.069 0.037 0.006 0.001 0.013 0.004 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.501 0.015 0.070 0.274 51 T 0.027 0.041 0.014 0.003 0.013 0.011 0.016 0.005 0.003 0.001 0.001 0.001 0.001 0.002 0.006 0.005 0.181 0.013 0.091 0.566 52 F 0.026 0.017 0.003 0.001 0.001 0.003 0.007 0.003 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.002 0.767 0.010 0.022 0.132 53 T 0.025 0.024 0.007 0.002 0.002 0.001 0.005 0.005 0.003 0.001 0.007 0.003 0.013 0.017 0.019 0.012 0.223 0.011 0.230 0.390 54 V 0.007 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.002 0.645 0.003 0.021 0.296 55 T 0.012 0.023 0.002 0.001 0.001 0.002 0.002 0.002 0.020 0.009 0.009 0.004 0.012 0.009 0.010 0.007 0.346 0.007 0.227 0.297 56 E 0.065 0.012 0.003 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.003 0.002 0.002 0.003 0.002 0.002 0.269 0.013 0.064 0.551