# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	2.02e-11	d.15.7.1	37821
2igd	61	2.24e-11		
2on8A	56	2.28e-11		
2gi9A	56	3.35e-11		
2qmtA	56	3.70e-11		
2b7eA	59	1.226		
1vf8A	377	14.28	c.1.8.5,d.26.3.1	120029,120030
2qklA	127	21.11		
1ql3A	99	21.22	a.3.1.1	15822
1krnA	88	24.90	g.14.1.1	44629
1x2gA	337	25.11		
1iktA	120	28.62	d.106.1.1	66188
2v05A	311	32.77		
3cjsA	60	33.15		
1ptf	88	36.25		
1ptfA	88	37.35	d.94.1.1	40549
5hpgA	84	37.68	g.14.1.1	44642
2f6eA	127	38.96		
1uwcA	261	40.39	c.69.1.17	100101
3b4sA	94	41.16		
2q00A	129	41.32		
1fioA	196	44.30	a.47.2.1	17773
1hz6A	72	44.64	d.15.7.1	61429
2qzgA	94	44.76		
2qsbA	89	46.24		
1vkwA	218	46.57	d.90.1.2	108695
1i71A	83	50.05	g.14.1.1	61864
1eeuA	114	52.13	b.1.1.1	20546
1dw0A	112	52.38	a.3.1.1	15911
3cz6A	168	57.35		
1pch	88	60.68		
1cxcA	124	61.98	a.3.1.1	15890
12asA	330	63.63	d.104.1.1	40783
1pchA	88	65.35	d.94.1.1	40564
1y51A	88	66.84		
2d8dA	90	71.30	a.130.1.1	131329
1nl1A	147	72.53	g.14.1.1,g.32.1.1	91949,91950
1axhA	37	73.36	g.3.6.2	44109
2fd6A	122	76.85	g.3.11.1,g.14.1.1	133293,133294
2dk5A	91	78.61		
2nvnA	122	82.52	d.18.1.3	138633
2i9aA	145	84.07	g.3.11.1,g.14.1.1	137110,137111
2it9A	127	87.89	d.18.1.3	137634
2cruA	118	88.27	a.5.6.1	130742
3c2cA	112	89.19	a.3.1.1	15885