# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	3.17e-12	d.15.7.1	37821
2igd	61	3.41e-12		
2on8A	56	3.60e-12		
2gi9A	56	5.27e-12		
2qmtA	56	5.47e-12		
2b7eA	59	1.247		
1vf8A	377	14.52	c.1.8.5,d.26.3.1	120029,120030
1krnA	88	15.99	g.14.1.1	44629
1iktA	120	17.20	d.106.1.1	66188
2q00A	129	19.45		
1ql3A	99	19.82	a.3.1.1	15822
5hpgA	84	20.27	g.14.1.1	44642
1x2gA	337	21.63		
2v05A	311	24.71		
3cjsA	60	27.49		
2f6eA	127	29.97		
1nl1A	147	36.48	g.14.1.1,g.32.1.1	91949,91950
1i71A	83	38.26	g.14.1.1	61864
1uwcA	261	40.71	c.69.1.17	100101
3cz6A	168	46.05		
1ic6A	279	47.37	c.41.1.1	62257
2qsbA	89	47.73		
1eeuA	114	48.69	b.1.1.1	20546
2qzgA	94	49.45		
1i8oA	114	50.55	a.3.1.1	61979
1vkwA	218	51.42	d.90.1.2	108695
1co6A	107	56.83	a.3.1.1	15894
4ubpA	101	57.93	d.8.1.1	37352
1fioA	196	65.62	a.47.2.1	17773
2i9aA	145	66.99	g.3.11.1,g.14.1.1	137110,137111
1ptf	88	69.32		
1dw0A	112	69.34	a.3.1.1	15911
1ejxA	100	69.57	d.8.1.1	83182
2nvnA	122	69.70	d.18.1.3	138633
2fd6A	122	71.75	g.3.11.1,g.14.1.1	133293,133294
1ptfA	88	71.81	d.94.1.1	40549
2fvhA	120	79.83		
3b4sA	94	80.81		
2qklA	127	82.59		
2ahnA	222	83.28		
1ym0B	27	83.88		
1o9gA	250	85.89	c.66.1.29	86692
3c2cA	112	86.77	a.3.1.1	15885