# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	1.59e-12	d.15.7.1	37821
2igd	61	1.87e-12		
2on8A	56	2.03e-12		
2qmtA	56	2.86e-12		
2gi9A	56	3.73e-12		
2b7eA	59	0.6171		
1ql3A	99	3.497	a.3.1.1	15822
1vf8A	377	7.047	c.1.8.5,d.26.3.1	120029,120030
3cjsA	60	7.130		
1krnA	88	13.40	g.14.1.1	44629
1uwcA	261	18.77	c.69.1.17	100101
3cz6A	168	19.91		
2v05A	311	20.67		
1cxcA	124	21.11	a.3.1.1	15890
5hpgA	84	21.56	g.14.1.1	44642
2f6eA	127	24.38		
1cnoA	87	24.90	a.3.1.1	15814
1iktA	120	31.64	d.106.1.1	66188
2pwwA	127	32.44		
1rkqA	282	32.63	c.108.1.10	97621
1dw0A	112	33.06	a.3.1.1	15911
1nl1A	147	34.12	g.14.1.1,g.32.1.1	91949,91950
1i8oA	114	35.47	a.3.1.1	61979
2bh4X	134	38.65		
2d8dA	90	38.90	a.130.1.1	131329
1x2gA	337	38.97		
1qn2A	100	44.21	a.3.1.1	15882
2qklA	127	44.30		
3c2cA	112	44.33	a.3.1.1	15885
2shpA	525	46.40	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534
1i71A	83	46.92	g.14.1.1	61864
2jt1A	77	47.32		
1zpvA	91	48.32	d.58.18.7	125475
2i9aA	145	49.01	g.3.11.1,g.14.1.1	137110,137111
1vydA	116	52.06	a.3.1.1	108900
1vkwA	218	53.86	d.90.1.2	108695
1ymqA	261	58.84	c.108.1.10	123707
2q00A	129	59.31		
1co6A	107	60.65	a.3.1.1	15894
3b4sA	94	62.23		
2fd6A	122	62.60	g.3.11.1,g.14.1.1	133293,133294
1tn3A	137	65.71	d.169.1.1	42423
2pmkA	243	65.91		
1ul7A	102	69.14	d.129.6.1	99540
1jdlA	121	69.49	a.3.1.1	66557
2ifxA	114	71.14		
2oieA	111	73.63	a.204.1.2	139092
2v9cA	215	74.18		
1wycA	392	74.67		
1xviA	275	75.32	c.108.1.10	116088
1a0hA	159	76.38	b.47.1.2,g.14.1.1	26229,44655
2ffgA	87	77.09	d.317.1.1	133383
1hzfA	367	78.63	a.102.4.4	76731
1fioA	196	78.93	a.47.2.1	17773
1in0A	163	79.86	d.58.49.1,d.58.49.1	83694,83695
1jhsA	188	81.07	d.107.1.1	84172
2hf2A	283	82.32		
2f68X	313	83.03		
2bibA	547	85.33	b.109.1.1,d.157.1.8	128581,128582
1z3xA	238	86.06	a.118.1.22,a.261.1.1	124416,124417
2ce0A	105	86.45		
1wnyA	186	86.95		
1eeuA	114	87.40	b.1.1.1	20546
1ptf	88	88.00		
1ptfA	88	88.49	d.94.1.1	40549