# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	4.11e-11		
2igdA	61	4.15e-11	d.15.7.1	37821
2on8A	56	4.82e-11		
2qmtA	56	4.91e-11		
2gi9A	56	6.24e-11		
2b7eA	59	0.5037		
1vf8A	377	16.78	c.1.8.5,d.26.3.1	120029,120030
1krnA	88	17.80	g.14.1.1	44629
2qklA	127	20.87		
5hpgA	84	24.17	g.14.1.1	44642
2q00A	129	24.79		
1uwcA	261	24.92	c.69.1.17	100101
1ptf	88	26.35		
1ptfA	88	26.84	d.94.1.1	40549
1iktA	120	27.76	d.106.1.1	66188
3cjsA	60	28.08		
2v05A	311	34.87		
1fioA	196	35.91	a.47.2.1	17773
1i71A	83	40.64	g.14.1.1	61864
2qsbA	89	41.66		
1nl1A	147	42.11	g.14.1.1,g.32.1.1	91949,91950
2dk5A	91	43.91		
1y51A	88	44.66		
1pchA	88	44.86	d.94.1.1	40564
2qzgA	94	45.33		
2f6eA	127	45.38		
1ql3A	99	46.48	a.3.1.1	15822
1pch	88	50.68		
1xviA	275	54.20	c.108.1.10	116088
3cz6A	168	56.64		
1eeuA	114	61.00	b.1.1.1	20546
1cxcA	124	62.59	a.3.1.1	15890
2d8dA	90	63.39	a.130.1.1	131329
2cruA	118	64.05	a.5.6.1	130742
1vkwA	218	68.21	d.90.1.2	108695
2ahnA	222	72.45		
1dw0A	112	73.71	a.3.1.1	15911
3b4sA	94	73.89		
2ffgA	87	78.29	d.317.1.1	133383
1hz6A	72	79.10	d.15.7.1	61429
2h6fB	437	79.15	a.102.4.3	136186
2hy5A	130	81.88	c.114.1.1	136865
1k7kA	221	82.28	c.51.4.1	72104
1jhsA	188	84.24	d.107.1.1	84172
1l6xB	34	87.84	k.13.1.1	73644
2jt1A	77	88.21