# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	7.12e-10		
2igdA	61	7.64e-10	d.15.7.1	37821
2on8A	56	9.18e-10		
2qmtA	56	9.31e-10		
2gi9A	56	1.23e-09		
2b7eA	59	0.8110		
1krnA	88	17.75	g.14.1.1	44629
1iktA	120	19.60	d.106.1.1	66188
2q00A	129	19.95		
1vf8A	377	20.59	c.1.8.5,d.26.3.1	120029,120030
5hpgA	84	24.19	g.14.1.1	44642
2qklA	127	24.52		
2v05A	311	29.67		
1uwcA	261	33.73	c.69.1.17	100101
1i71A	83	37.82	g.14.1.1	61864
2qsbA	89	38.74		
2f6eA	127	38.85		
1nl1A	147	41.91	g.14.1.1,g.32.1.1	91949,91950
2qzgA	94	41.92		
1eeuA	114	43.58	b.1.1.1	20546
3cjsA	60	45.10		
1fioA	196	46.58	a.47.2.1	17773
1ptf	88	49.56		
1ptfA	88	53.02	d.94.1.1	40549
2dk5A	91	54.90		
3cz6A	168	55.38		
1vkwA	218	56.18	d.90.1.2	108695
1cxcA	124	60.21	a.3.1.1	15890
2ffgA	87	63.94	d.317.1.1	133383
1hz6A	72	64.96	d.15.7.1	61429
1ql3A	99	69.88	a.3.1.1	15822
2cruA	118	71.10	a.5.6.1	130742
1dw0A	112	73.88	a.3.1.1	15911
2jt1A	77	73.95		
2fd6A	122	74.50	g.3.11.1,g.14.1.1	133293,133294
2hy5A	130	74.52	c.114.1.1	136865
1pchA	88	74.83	d.94.1.1	40564
2h6fB	437	76.61	a.102.4.3	136186
2ahnA	222	77.68		
1xviA	275	80.15	c.108.1.10	116088
3c2cA	112	81.62	a.3.1.1	15885
1y51A	88	84.23		
1x2gA	337	84.97		
1ic6A	279	89.94	c.41.1.1	62257