# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	6.23e-10		
2igdA	61	6.66e-10	d.15.7.1	37821
2on8A	56	7.49e-10		
2qmtA	56	8.11e-10		
2gi9A	56	9.67e-10		
2b7eA	59	0.8063		
1vf8A	377	16.20	c.1.8.5,d.26.3.1	120029,120030
1krnA	88	19.63	g.14.1.1	44629
2q00A	129	20.49		
2qklA	127	22.95		
1iktA	120	24.59	d.106.1.1	66188
5hpgA	84	25.02	g.14.1.1	44642
2v05A	311	29.66		
2qsbA	89	35.95		
2f6eA	127	36.45		
1uwcA	261	37.16	c.69.1.17	100101
1ptf	88	40.10		
1ptfA	88	40.15	d.94.1.1	40549
1i71A	83	42.06	g.14.1.1	61864
2qzgA	94	44.55		
1fioA	196	45.43	a.47.2.1	17773
1eeuA	114	46.35	b.1.1.1	20546
1nl1A	147	47.80	g.14.1.1,g.32.1.1	91949,91950
3cz6A	168	50.18		
3cjsA	60	51.23		
1xviA	275	51.85	c.108.1.10	116088
2dk5A	91	55.85		
2ffgA	87	58.46	d.317.1.1	133383
1cxcA	124	59.00	a.3.1.1	15890
1pchA	88	66.51	d.94.1.1	40564
1c44A	123	69.40	d.106.1.1	40795
1ql3A	99	70.11	a.3.1.1	15822
2cruA	118	72.62	a.5.6.1	130742
1x2gA	337	73.68		
2h6fB	437	76.34	a.102.4.3	136186
2fd6A	122	77.26	g.3.11.1,g.14.1.1	133293,133294
1hz6A	72	77.61	d.15.7.1	61429
1vkwA	218	78.06	d.90.1.2	108695
1pch	88	78.79		
1y51A	88	85.33		
2ahnA	222	85.86		
3b4sA	94	86.73		
1k7kA	221	88.80	c.51.4.1	72104
1jhsA	188	89.55	d.107.1.1	84172
1zbdB	134	89.84	g.50.1.1	45359
2jt1A	77	89.90