# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	2.49e-08		
2igdA	61	2.55e-08	d.15.7.1	37821
2on8A	56	3.26e-08		
2qmtA	56	3.42e-08		
2gi9A	56	3.51e-08		
2b7eA	59	1.368		
1ql3A	99	27.35	a.3.1.1	15822
1fioA	196	27.35	a.47.2.1	17773
1eeuA	114	29.00	b.1.1.1	20546
2qzgA	94	32.20		
1vf8A	377	32.25	c.1.8.5,d.26.3.1	120029,120030
1cxcA	124	32.61	a.3.1.1	15890
2h6fB	437	36.42	a.102.4.3	136186
2qsbA	89	36.62		
2bh4X	134	41.34		
3c2cA	112	47.34	a.3.1.1	15885
1auiB	169	48.94	a.39.1.5	17325
1z3xA	238	50.53	a.118.1.22,a.261.1.1	124416,124417
2ct9A	208	51.58		
1pch	88	52.44		
1co6A	107	53.80	a.3.1.1	15894
4ubpA	101	55.76	d.8.1.1	37352
1ejxA	100	55.83	d.8.1.1	83182
1ptf	88	56.14		
1ptfA	88	56.16	d.94.1.1	40549
1qx2A	76	58.90	a.39.1.1	104622
2fvhA	120	66.32		
1hroA	106	67.43	a.3.1.1	15897
1x2gA	337	68.48		
2pjkA	178	71.34		
1iktA	120	73.11	d.106.1.1	66188
2dsjA	423	73.26		
1pchA	88	73.99	d.94.1.1	40564
2prdA	174	75.06	b.40.5.1	25435
1tmyA	120	76.65	c.23.1.1	31083
2r25B	133	79.19		
3bd3A	112	80.41		
2h9dA	101	81.68	a.130.1.1	136250
1zpvA	91	82.60	d.58.18.7	125475
2pwwA	127	83.74		
1y5eA	169	87.30	c.57.1.1	122632
2zfdA	226	88.67