# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	4.48e-12	d.15.7.1	37821
2on8A	56	4.94e-12		
2igd	61	5.37e-12		
2gi9A	56	6.47e-12		
2qmtA	56	7.36e-12		
2b7eA	59	0.5282		
1vf8A	377	8.462	c.1.8.5,d.26.3.1	120029,120030
2q00A	129	20.05		
1ql3A	99	20.16	a.3.1.1	15822
2qklA	127	22.08		
3b4sA	94	27.63		
1iktA	120	27.77	d.106.1.1	66188
1ptf	88	32.95		
1krnA	88	33.75	g.14.1.1	44629
1ptfA	88	34.24	d.94.1.1	40549
2v05A	311	34.27		
2hy5A	130	38.25	c.114.1.1	136865
5hpgA	84	40.76	g.14.1.1	44642
1ic6A	279	41.23	c.41.1.1	62257
2f6eA	127	41.89		
1x2gA	337	42.50		
1fioA	196	43.94	a.47.2.1	17773
1uwcA	261	44.39	c.69.1.17	100101
2nq5A	755	46.11		
3cz6A	168	47.55		
3cjsA	60	48.25		
2v9cA	215	48.25		
1y51A	88	49.15		
2qsbA	89	49.90		
1z3xA	238	50.57	a.118.1.22,a.261.1.1	124416,124417
2dk5A	91	56.15		
1nl1A	147	58.10	g.14.1.1,g.32.1.1	91949,91950
1dw0A	112	62.51	a.3.1.1	15911
1pchA	88	66.74	d.94.1.1	40564
2qzgA	94	67.42		
2d1pB	119	68.38	c.114.1.1	131137
2ifxA	114	69.26		
2d8dA	90	71.01	a.130.1.1	131329
3c2cA	112	74.05	a.3.1.1	15885
1pch	88	75.35		
2ahnA	222	75.36		
2h6fB	437	76.75	a.102.4.3	136186
1vkwA	218	79.13	d.90.1.2	108695
1xviA	275	83.49	c.108.1.10	116088
1i8oA	114	85.64	a.3.1.1	61979
1jhsA	188	90.00	d.107.1.1	84172