# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2igdA 61 1.28e-15 d.15.7.1 37821 2on8A 56 1.48e-15 2igd 61 1.63e-15 2gi9A 56 1.91e-15 2qmtA 56 2.12e-15 2b7eA 59 0.4196 2v1pA 467 1.885 1u55A 188 1.977 d.278.1.1 107677 2nq5A 755 2.505 2v7kA 361 3.801 1qi9A 556 4.327 a.111.1.2 19053 1r17A 343 4.734 b.2.3.4,b.2.3.4 96796,96797 2d5lA 706 5.081 1gteA 1025 7.097 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2o09A 189 7.317 2cmtA 172 8.601 1ojjA 402 9.198 b.29.1.10 93130 1wviA 257 11.02 c.108.1.14 114915 1nrwA 288 11.46 c.108.1.10 86128 2iw0A 254 11.55 c.6.2.3 137737 2qklA 127 13.05 3cncA 220 13.11 2q00A 129 13.68 2f68X 313 15.08 1ec7A 446 16.58 c.1.11.2,d.54.1.1 29218,38862 2q4aA 330 17.75 b.82.2.8 139839 1r9lA 309 20.17 c.94.1.1 97262 2pgeA 377 21.22 1pv5A 264 22.27 d.251.1.1 95150 2qeeA 437 22.36 2inpC 328 22.48 3ctpA 330 24.75 2g5dA 422 25.78 1mppA 361 25.93 b.50.1.2 26856 1m7vA 363 26.08 d.174.1.1 78748 1sltA 134 26.37 b.29.1.3 24186 3cpgA 282 27.82 2c0hA 353 28.72 c.1.8.3 129594 2eh6A 375 28.76 2rmcA 182 29.02 b.62.1.1 27491 1t17A 148 29.57 d.129.3.6 112215 2gwgA 350 30.39 c.1.9.15 135805 2c4mA 796 30.46 1uv4A 293 30.54 b.67.2.1 119705 2j8gA 339 31.09 1b9hA 388 31.15 c.67.1.4 34488 2ob9A 130 31.21 1nl1A 147 31.77 g.14.1.1,g.32.1.1 91949,91950 2bm0A 691 32.89 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 2nutB 753 33.47 1jc9A 269 33.94 d.171.1.1 66490 2cfcA 250 34.17 2nsfA 261 34.63 2qazA 128 37.30 1h0hA 977 38.48 b.52.2.2,c.81.1.1 76435,76436 1xviA 275 38.80 c.108.1.10 116088 1v93A 296 39.34 c.1.23.1 100532 1a78A 134 39.37 b.29.1.3 24212 1h32B 138 39.38 a.3.1.1 76620 1u9cA 224 39.73 c.23.16.2 113234 1h09A 338 40.03 b.109.1.1,c.1.8.8 83420,83421 1hufA 140 40.45 d.195.1.1 61272 1d0cA 444 40.88 d.174.1.1 64769 1q7fA 286 42.33 b.68.9.1 96036 1qqfA 277 42.54 a.102.4.4 18875 1iktA 120 43.47 d.106.1.1 66188 3b4sA 94 43.55 1vns 609 44.37 2cjjA 93 46.62 a.4.1.3 130540 2z35A 112 47.61 1at3A 247 47.95 b.57.1.1 27021 2i7pA 362 48.78 2oegA 505 49.28 1oq1A 223 49.40 b.29.1.17 93408 2hpvA 208 49.54 3cz6A 168 50.38 2sli 679 52.26 1fioA 196 53.55 a.47.2.1 17773 2jhmF 218 53.78 1x1iA 752 54.20 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1uh5A 329 55.37 c.2.1.2 107840 2pzmA 330 57.58 2guyA 478 57.70 b.71.1.1,c.1.8.1 135754,135755 3cmgA 667 59.42 1krnA 88 60.75 g.14.1.1 44629 1oewA 329 62.88 b.50.1.2 86924 2nydA 370 63.33 1gzcA 239 63.45 b.29.1.1 70803 2pu3A 211 64.89 2j5aA 110 66.39 1jhnA 424 66.86 b.104.1.1,b.29.1.12 66722,70060 2qwxA 231 67.13 2z6wA 165 67.89 1j31A 262 70.73 d.160.1.2 90808 1vybA 238 71.77 d.151.1.1 108897 2bnuA 203 72.48 2nxbA 123 72.61 2o02A 230 73.34 2qf7A 1165 74.10 2c31A 568 74.55 c.31.1.3,c.36.1.5,c.36.1.9 129704,129705,129706 2qu7A 288 77.18 2qsbA 89 77.53 1zkcA 197 79.26 b.62.1.1 125182 2calA 154 79.52 3cjsA 60 79.86 1qh4A 380 80.02 a.83.1.1,d.128.1.2 18462,41197 2v05A 311 80.31 2b8qA 142 80.90 d.58.6.1 128103 1c4kA 730 81.91 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 2oo1A 113 83.25 2dk5A 91 84.02 2hqyA 305 87.05 3ctkA 248 87.18 2qwwA 154 87.22 2fsaA 174 88.20 2cb5A 453 89.56 d.3.1.1 37035