# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	1.35e-11	d.15.7.1	37821
2on8A	56	1.44e-11		
2igd	61	1.55e-11		
2gi9A	56	1.92e-11		
2qmtA	56	2.17e-11		
2b7eA	59	0.7604		
2q00A	129	11.66		
1vf8A	377	12.02	c.1.8.5,d.26.3.1	120029,120030
2qklA	127	18.56		
1ql3A	99	23.21	a.3.1.1	15822
1iktA	120	24.58	d.106.1.1	66188
1krnA	88	25.44	g.14.1.1	44629
1ic6A	279	25.96	c.41.1.1	62257
2v05A	311	32.17		
5hpgA	84	35.29	g.14.1.1	44642
3cz6A	168	37.90		
2f6eA	127	38.34		
1x2gA	337	40.89		
2nq5A	755	45.62		
1nl1A	147	46.36	g.14.1.1,g.32.1.1	91949,91950
1fioA	196	49.27	a.47.2.1	17773
2v9cA	215	49.35		
1uwcA	261	50.96	c.69.1.17	100101
2qsbA	89	51.41		
3cjsA	60	52.08		
2hy5A	130	52.82	c.114.1.1	136865
1ptf	88	57.86		
2h6fB	437	60.23	a.102.4.3	136186
2dk5A	91	61.31		
1z3xA	238	61.49	a.118.1.22,a.261.1.1	124416,124417
2qzgA	94	61.75		
1ptfA	88	62.84	d.94.1.1	40549
3b4sA	94	63.67		
1vkwA	218	64.51	d.90.1.2	108695
1i71A	83	65.61	g.14.1.1	61864
2pwaA	279	67.13	c.41.1.1	139762
2d1pB	119	68.54	c.114.1.1	131137
2ifxA	114	75.14		
2nvnA	122	77.29	d.18.1.3	138633
2ahnA	222	78.29		
1dw0A	112	80.32	a.3.1.1	15911
1cxcA	124	83.42	a.3.1.1	15890
3c2cA	112	83.52	a.3.1.1	15885
1xviA	275	83.74	c.108.1.10	116088
1y51A	88	86.38		
1dbiA	280	87.36	c.41.1.1	32543