# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	3.73e-11	d.15.7.1	37821
2igd	61	3.99e-11		
2on8A	56	4.29e-11		
2qmtA	56	6.15e-11		
2gi9A	56	6.18e-11		
2b7eA	59	1.667		
2q00A	129	10.47		
1vf8A	377	12.85	c.1.8.5,d.26.3.1	120029,120030
1ql3A	99	21.85	a.3.1.1	15822
1krnA	88	24.20	g.14.1.1	44629
5hpgA	84	27.53	g.14.1.1	44642
2v05A	311	36.08		
3cz6A	168	39.54		
3cjsA	60	40.11		
1iktA	120	40.22	d.106.1.1	66188
2f6eA	127	42.60		
1nl1A	147	48.06	g.14.1.1,g.32.1.1	91949,91950
1i71A	83	50.51	g.14.1.1	61864
3b4sA	94	56.06		
1eeuA	114	56.30	b.1.1.1	20546
1uwcA	261	56.46	c.69.1.17	100101
2qsbA	89	60.26		
2qklA	127	60.36		
2qzgA	94	63.27		
1fioA	196	63.44	a.47.2.1	17773
1cxcA	124	63.65	a.3.1.1	15890
3c2cA	112	65.18	a.3.1.1	15885
12asA	330	67.75	d.104.1.1	40783
1ic6A	279	69.06	c.41.1.1	62257
1z3xA	238	74.33	a.118.1.22,a.261.1.1	124416,124417
1ptf	88	76.15		
1ptfA	88	79.07	d.94.1.1	40549
1x2gA	337	79.52		
1xviA	275	84.59	c.108.1.10	116088