# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	3.95e-11	d.15.7.1	37821
2igd	61	4.33e-11		
2on8A	56	4.44e-11		
2gi9A	56	6.46e-11		
2qmtA	56	6.85e-11		
2b7eA	59	0.8343		
1vf8A	377	12.06	c.1.8.5,d.26.3.1	120029,120030
1krnA	88	14.75	g.14.1.1	44629
1ql3A	99	19.39	a.3.1.1	15822
2v05A	311	19.96		
2q00A	129	20.85		
2f6eA	127	24.03		
1iktA	120	26.10	d.106.1.1	66188
5hpgA	84	29.77	g.14.1.1	44642
1i71A	83	30.97	g.14.1.1	61864
3b4sA	94	32.09		
3cjsA	60	34.13		
3cz6A	168	35.47		
1uwcA	261	36.82	c.69.1.17	100101
1cxcA	124	39.69	a.3.1.1	15890
1eeuA	114	45.78	b.1.1.1	20546
1nl1A	147	48.63	g.14.1.1,g.32.1.1	91949,91950
1fioA	196	49.69	a.47.2.1	17773
1z3xA	238	50.83	a.118.1.22,a.261.1.1	124416,124417
1dw0A	112	54.22	a.3.1.1	15911
2dk5A	91	58.32		
1ptf	88	62.04		
1ptfA	88	65.11	d.94.1.1	40549
3c2cA	112	65.12	a.3.1.1	15885
2qzgA	94	67.75		
1xviA	275	68.13	c.108.1.10	116088
2qsbA	89	68.64		
2ahnA	222	77.17		
2i9aA	145	78.29	g.3.11.1,g.14.1.1	137110,137111
1ic6A	279	80.83	c.41.1.1	62257
12asA	330	82.42	d.104.1.1	40783
1y51A	88	84.73		
1zbdB	134	86.39	g.50.1.1	45359
1hz6A	72	87.66	d.15.7.1	61429
1pch	88	88.05		
2fd6A	122	89.07	g.3.11.1,g.14.1.1	133293,133294
2v9cA	215	89.62