# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	2.79e-14	d.15.7.1	37821
2igd	61	3.14e-14		
2on8A	56	3.92e-14		
2gi9A	56	5.21e-14		
2qmtA	56	5.29e-14		
2b7eA	59	0.9712		
2qklA	127	3.225		
1eeuA	114	18.85	b.1.1.1	20546
1x2gA	337	20.25		
2q00A	129	22.73		
2h6fB	437	22.78	a.102.4.3	136186
1ic6A	279	23.56	c.41.1.1	62257
1z3xA	238	26.68	a.118.1.22,a.261.1.1	124416,124417
2qzgA	94	27.31		
1ql3A	99	27.65	a.3.1.1	15822
2qsbA	89	32.27		
1vf8A	377	35.57	c.1.8.5,d.26.3.1	120029,120030
2pwaA	279	44.10	c.41.1.1	139762
2hy5A	130	45.98	c.114.1.1	136865
2z35A	112	46.76		
3cz6A	168	48.35		
2nvnA	122	55.94	d.18.1.3	138633
3b4sA	94	55.97		
2dtqA	223	70.07	b.1.1.2,b.1.1.2	131725,131726
2f6eA	127	72.38		
2v05A	311	73.24		
1ptf	88	75.88		
1ptfA	88	80.01	d.94.1.1	40549
3cjsA	60	81.78		
3c2cA	112	84.17	a.3.1.1	15885
2ahnA	222	84.76		
5hpgA	84	86.65	g.14.1.1	44642