# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gi9A 56 5.33e-08 2igd 61 6.46e-08 2on8A 56 8.13e-08 2igdA 61 8.94e-08 d.15.7.1 37821 2qmtA 56 1.14e-07 1ysjA 404 1.338 c.56.5.4,d.58.19.1 123975,123976 1lfwA 470 3.863 c.56.5.4,d.58.19.1 77942,77943 1mwqA 101 4.653 d.58.4.7 91481 1z2lA 423 6.779 c.56.5.4,d.58.19.1 124383,124384 1s7iA 124 7.231 d.58.4.9 105353 1sqeA 109 7.973 d.58.4.5 105908 3c19A 186 10.62 1vmbA 140 13.22 d.58.14.1 113672 2pa2A 151 16.79 2ozzA 231 17.04 1vr7A 142 18.30 d.156.1.2 120443 2rhsA 294 19.37 3pmgA 561 20.29 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2j5aA 110 20.71 1vgyA 393 20.77 c.56.5.4,d.58.19.1 100620,100621 1pn0A 665 22.78 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2uubJ 105 23.05 d.58.15.1 139941 1x2gA 337 26.81 1zpvA 91 27.08 d.58.18.7 125475 1brwA 433 27.51 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2bf5A 98 28.93 d.137.1.1 128405 1cqmA 101 30.12 d.58.14.1 39321 1fitA 147 30.54 d.13.1.1 37499 1fit 147 30.70 2gqpA 236 31.26 d.122.1.1 135513 2qt7A 91 33.44 1j75A 67 33.90 a.4.5.19 62673 1fvkA 189 35.50 c.47.1.13 90351 2qyvA 487 36.36 1zavA 180 36.94 1wd6A 123 39.22 d.58.4.12 114525 1oaiA 59 40.68 a.5.2.3 81255 2hztA 107 41.23 1b24A 188 41.70 d.95.2.1,d.95.2.1 40573,40574 2pwyA 258 41.71 2dtrA 226 43.70 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1ufmA 84 43.88 a.4.5.47 107816 2i9fA 69 44.33 1vknA 351 44.50 c.2.1.3,d.81.1.1 108676,108677 2hiqA 113 46.18 d.58.4.12 136529 1f3vA 179 46.45 d.58.22.1 39382 1pjvA 32 49.61 g.3.7.2 94792 2i82A 217 51.65 2jdjA 105 52.25 1r6oC 106 53.31 d.45.1.2 118738 2iiiA 135 53.36 1zybA 232 53.64 a.4.5.4,b.82.3.2 125815,125816 2fswA 107 54.16 a.4.5.69 134042 1h3qA 140 54.71 d.110.4.3 76652 1z1dA 103 55.56 a.4.5.16 124351 1p99A 295 56.33 c.94.1.1 94384 2afwA 329 57.78 c.56.5.8 126707 2joeA 139 59.74 2fygA 128 59.77 g.86.1.1 134369 3d1cA 369 60.24 1koeA 172 60.85 d.169.1.5 42448 1fnoA 417 61.82 d.58.19.1,c.56.5.4 70145,75841 2ebeA 106 66.25 1tw3A 360 66.95 a.4.5.29,c.66.1.12 107373,107374 2aibA 98 70.27 a.134.1.1 126824 2e1bA 216 70.27 1co6A 107 74.16 a.3.1.1 15894 1x89A 178 75.35 b.60.1.1 121799 1lriA 98 75.99 a.134.1.1 74223 1cg2A 393 77.76 c.56.5.4,d.58.19.1 33844,39360 2aiuA 105 78.98 2dsjA 423 79.41 1ucrA 78 79.53 a.4.5.45 99188 1xs5A 241 80.00 c.94.1.1 115912 1koe 172 80.07 2fu4A 83 81.37 2iygA 124 81.77 3cedA 98 83.47 2heoA 67 85.46 1hstA 90 85.78 a.4.5.13 16140 1ekrA 161 86.25 d.58.21.1 39380 1rh6A 55 86.52 a.6.1.7 104935 2hgcA 102 89.27 1tuvA 114 89.74 d.58.4.11 112665