# TARGET T0499 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0499.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.77849 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.148 0.117 0.225 0.320 0.004 0.087 0.007 0.008 0.011 0.003 0.016 0.020 0.021 0.001 0.003 0.009 2 T 0.018 0.222 0.192 0.537 0.001 0.009 0.001 0.003 0.005 0.001 0.003 0.003 0.003 0.001 0.001 0.003 3 Y 0.006 0.017 0.069 0.899 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 4 K 0.001 0.005 0.116 0.875 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 L 0.001 0.001 0.007 0.981 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 I 0.001 0.008 0.007 0.973 0.008 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 L 0.001 0.003 0.002 0.933 0.051 0.009 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 N 0.001 0.018 0.007 0.457 0.105 0.363 0.001 0.031 0.003 0.004 0.008 0.002 0.001 0.001 0.001 0.001 9 L 0.005 0.030 0.003 0.175 0.063 0.350 0.003 0.051 0.012 0.016 0.262 0.021 0.006 0.001 0.002 0.001 10 K 0.010 0.309 0.009 0.104 0.010 0.068 0.002 0.045 0.017 0.010 0.160 0.232 0.012 0.001 0.007 0.004 11 Q 0.032 0.100 0.060 0.138 0.013 0.115 0.010 0.009 0.053 0.015 0.080 0.195 0.104 0.004 0.008 0.064 12 A 0.054 0.044 0.249 0.065 0.007 0.057 0.025 0.008 0.004 0.004 0.075 0.100 0.268 0.009 0.011 0.021 13 K 0.013 0.060 0.103 0.059 0.001 0.110 0.009 0.011 0.005 0.002 0.113 0.116 0.359 0.002 0.016 0.021 14 E 0.013 0.016 0.043 0.110 0.002 0.031 0.008 0.002 0.007 0.002 0.182 0.079 0.477 0.004 0.004 0.021 15 E 0.016 0.036 0.116 0.141 0.001 0.020 0.006 0.002 0.001 0.001 0.028 0.205 0.409 0.002 0.007 0.010 16 A 0.002 0.007 0.034 0.077 0.001 0.082 0.007 0.001 0.001 0.001 0.023 0.045 0.703 0.002 0.003 0.012 17 I 0.003 0.007 0.017 0.041 0.003 0.082 0.008 0.001 0.001 0.001 0.042 0.022 0.762 0.008 0.002 0.004 18 K 0.002 0.074 0.015 0.059 0.001 0.008 0.005 0.003 0.001 0.001 0.023 0.058 0.724 0.008 0.011 0.008 19 E 0.002 0.005 0.018 0.064 0.001 0.012 0.004 0.001 0.003 0.001 0.008 0.029 0.790 0.005 0.007 0.051 20 A 0.007 0.006 0.069 0.020 0.001 0.021 0.010 0.001 0.001 0.001 0.010 0.009 0.785 0.005 0.007 0.047 21 V 0.011 0.084 0.117 0.136 0.002 0.021 0.011 0.008 0.002 0.002 0.011 0.021 0.519 0.007 0.012 0.037 22 D 0.006 0.007 0.010 0.011 0.006 0.410 0.022 0.001 0.001 0.003 0.027 0.023 0.442 0.020 0.002 0.009 23 A 0.003 0.008 0.006 0.008 0.001 0.010 0.001 0.006 0.001 0.001 0.624 0.031 0.288 0.001 0.010 0.004 24 G 0.001 0.009 0.004 0.007 0.001 0.006 0.003 0.001 0.001 0.003 0.024 0.641 0.291 0.002 0.002 0.006 25 T 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.009 0.013 0.971 0.001 0.001 0.001 26 A 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.032 0.027 0.937 0.001 0.001 0.001 27 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.051 0.945 0.001 0.001 0.001 28 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 29 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 30 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 31 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 32 L 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.988 0.003 0.001 0.004 33 I 0.001 0.001 0.007 0.004 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.002 0.960 0.006 0.005 0.011 34 A 0.001 0.003 0.019 0.019 0.001 0.007 0.019 0.001 0.001 0.001 0.005 0.003 0.864 0.015 0.019 0.024 35 N 0.005 0.009 0.012 0.006 0.027 0.042 0.100 0.005 0.002 0.001 0.009 0.004 0.385 0.349 0.008 0.036 36 A 0.009 0.011 0.013 0.007 0.009 0.007 0.022 0.071 0.002 0.001 0.100 0.008 0.165 0.246 0.314 0.014 37 K 0.009 0.089 0.047 0.012 0.001 0.005 0.007 0.019 0.050 0.008 0.012 0.067 0.043 0.007 0.278 0.346 38 T 0.098 0.012 0.176 0.012 0.001 0.001 0.008 0.001 0.011 0.001 0.001 0.001 0.004 0.002 0.003 0.669 39 V 0.197 0.002 0.502 0.014 0.022 0.175 0.055 0.003 0.001 0.001 0.002 0.001 0.005 0.011 0.003 0.004 40 E 0.002 0.741 0.122 0.083 0.001 0.011 0.001 0.029 0.002 0.001 0.002 0.001 0.001 0.001 0.002 0.002 41 G 0.013 0.007 0.004 0.910 0.001 0.016 0.001 0.001 0.027 0.005 0.011 0.003 0.001 0.001 0.001 0.002 42 V 0.031 0.015 0.652 0.287 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 43 W 0.001 0.003 0.026 0.935 0.004 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 T 0.001 0.054 0.026 0.817 0.016 0.073 0.001 0.003 0.001 0.001 0.003 0.002 0.002 0.001 0.001 0.001 45 Y 0.001 0.018 0.006 0.285 0.036 0.574 0.002 0.015 0.002 0.002 0.046 0.006 0.006 0.001 0.001 0.001 46 K 0.004 0.168 0.017 0.151 0.011 0.136 0.002 0.041 0.006 0.002 0.339 0.097 0.022 0.001 0.003 0.001 47 D 0.008 0.116 0.019 0.118 0.004 0.106 0.004 0.007 0.021 0.004 0.128 0.355 0.090 0.002 0.007 0.011 48 E 0.044 0.066 0.137 0.091 0.006 0.038 0.023 0.004 0.007 0.001 0.103 0.127 0.282 0.013 0.015 0.043 49 I 0.015 0.105 0.302 0.103 0.002 0.065 0.018 0.008 0.004 0.001 0.011 0.077 0.218 0.008 0.026 0.036 50 K 0.016 0.084 0.206 0.286 0.005 0.042 0.024 0.006 0.009 0.003 0.014 0.008 0.196 0.013 0.012 0.076 51 T 0.052 0.088 0.232 0.487 0.003 0.025 0.007 0.005 0.008 0.001 0.007 0.005 0.033 0.006 0.007 0.035 52 F 0.019 0.026 0.333 0.582 0.001 0.008 0.001 0.002 0.002 0.001 0.002 0.002 0.010 0.001 0.002 0.009 53 T 0.010 0.016 0.126 0.768 0.006 0.055 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.006 54 V 0.007 0.025 0.046 0.805 0.032 0.056 0.002 0.004 0.001 0.001 0.013 0.002 0.006 0.001 0.001 0.001 55 T 0.002 0.109 0.018 0.332 0.191 0.270 0.008 0.027 0.002 0.003 0.009 0.017 0.005 0.004 0.001 0.001 56 E 0.004 0.066 0.026 0.366 0.037 0.106 0.007 0.130 0.010 0.004 0.196 0.013 0.017 0.002 0.012 0.005