(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0499 L1d, E coli, 56 residues
    • gi|99032573|pdb|2GI9|A_1:56 Chain A, Backbone Conformational Constraints In A Microcrystalline U- 15n-Labeled Protein By 3d Dipolar-Shift Solid-State Nmr Spectroscopy [Taxonomy]
    • gi|161760905|pdb|2JU6|X Chain X, Solid-State Protein Structure Determination With Proton- Detected Triple Resonance 3d Magic-Angle Spinning Nmr Spectroscopy [Taxonomy]
    • gi|163931020|pdb|2QMT|A Chain A, Crystal Polymorphism Of Protein Gb1 Examined By Solid-State Nmr And X-Ray Diffraction [Taxonomy]
    • gi|183448054|pdb|2JSV|X Chain X, Dipole Tensor-Based Refinement For Atomic-Resolution Structure Determination Of A Nanocrystalline Protein By Solid-State Nmr Spectroscopy [Taxonomy]
    • gi|34810871|pdb|1P7E|A_1:56 Chain A, Gb3 Solution Structure Obtained By Refinement Of X-Ray Structure With Dipolar Couplings [Taxonomy]
    • gi|34810872|pdb|1P7F|A Chain A, Gb3 Solution Structure Obtained By Refinement Of X-Ray Structure With Dipolar Couplings [Taxonomy]
    • gi|126031555|pdb|2OED|A Chain A, Gb3 Solution Structure Obtained By Refinement Of X-Ray Structure With Dipolar Couplings [Taxonomy]
    • gi|1065200|pdb|1FCC|C_1:56 Chain C, Crystal Structure Of The C2 Fragment Of Streptococcal Protein G In Complex With The Fc Domain Of Human Igg [Taxonomy]
    • gi|157875391|pdb|1FCC|D Chain D, Crystal Structure Of The C2 Fragment Of Streptococcal Protein G In Complex With The Fc Domain Of Human Igg [Taxonomy]
    • gi|5542539|pdb|3GB1|A_1:56 Chain A, Structures Of B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|157831155|pdb|1GB1|A Chain A, A Novel, Highly Stable Fold Of The Immunoglobulin Binding Domain Of Streptococcal Protein G [Taxonomy]
    • gi|157833473|pdb|1PGA|A Chain A, Two Crystal Structures Of The B1 Immunoglobulin-Binding Domain Of Streptococcal Protein G And Comparison With Nmr [Taxonomy]
    • gi|157833474|pdb|1PGB|A Chain A, Two Crystal Structures Of The B1 Immunoglobulin-Binding Domain Of Streptoccocal Protein G And Comparison With Nmr [Taxonomy]
    • gi|157835028|pdb|2GB1|A Chain A, A Novel, Highly Stable Fold Of The Immunoglobulin Binding Domain Of Streptococcal Protein G [Taxonomy]
    • gi|14278227|pdb|1IBX|B_1:56 Chain B, Nmr Structure Of Dff40 And Dff45 N-Terminal Domain Complex
    • gi|157883859|pdb|2I2Y|A_1:56 Chain A, Solution Structure Of The Rrm Of Srp20 Bound To The Rna Cauc [Taxonomy]
    • gi|119390478|pdb|2NMQ|A_1:55 Chain A, Simultaneous Determination Of Protein Structure And Dynamics Using Rdcs [Taxonomy]
    • gi|158428903|pdb|2J52|A_1:56 Chain A, Solution Structure Of Gb1 Domain Protein G And Low And High Pressure. [Taxonomy]
    • gi|158428904|pdb|2J53|A Chain A, Solution Structure Of Gb1 Domain Protein G And Low And High Pressure [Taxonomy]
    • gi|37927559|pdb|1PN5|A_1:56 Chain A, Nmr Structure Of The Nalp1 Pyrin Domain (Pyd) [Taxonomy]
    • gi|15988267|pdb|1FD6|A_2:57 Chain A, Delta0: A Computationally Designed Core Variant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|157835190|pdb|2IGH|A_6:61 Chain A, Determination Of The Solution Structures Of Domains Ii And Iii Of Protein G From Streptococcus By 1h Nmr [Taxonomy]
    • gi|1064973|pdb|1IGC|A_6:61 Chain A, Igg1 Fab Fragment (Mopc21) Complex With Domain Iii Of Protein G From Streptococcus [Taxonomy]
    • gi|157831452|pdb|1IGD|A Chain A, The Third Igg-Binding Domain From Streptococcal Protein G: An Analysis By X-Ray Crystallography Of The Structure Alone And In A Complex With Fab [Taxonomy]
    • gi|157835188|pdb|2IGD|A Chain A, Anisotropic Structure Of Protein G Igg-Binding Domain Iii At 1.1 Angstrom Resolution [Taxonomy]
    • gi|149243209|pdb|2PLP|A_1:54 Chain A, Ultra High Resolution Backbone Conformation Of Protein Gb1 From Residual Dipolar Couplings Alone [Taxonomy]
    • gi|38492880|pdb|1Q10|A_1:56 Chain A, Ensemble Of 40 Structures Of The Dimeric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|38492881|pdb|1Q10|B Chain B, Ensemble Of 40 Structures Of The Dimeric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|15988266|pdb|1FCL|A_1:56 Chain A, Delta1.5: A Computationally Designed Core Variant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|21465426|pdb|1EM7|A_1:56 Chain A, Helix Variant Of The B1 Domain From Streptococcal Protein G [Taxonomy]
    • gi|7245924|pdb|1QKZ|A_6:61 Chain A, Fab Fragment (Mn14c11.6) In Complex With A Peptide Antigen Derived From Neisseria Meningitidis P1.7 Serosubtype Antigen And Domain Ii From Streptococcal Protein G [Taxonomy]
    • gi|71041692|pdb|1UWX|A_5:60 Chain A, P1.2 Serosubtype Antigen Derived From N. Meningitidis Pora In Complex With Fab Fragment [Taxonomy]
    • gi|71041693|pdb|1UWX|B Chain B, P1.2 Serosubtype Antigen Derived From N. Meningitidis Pora In Complex With Fab Fragment [Taxonomy]
    • gi|157835189|pdb|2IGG|A_6:61 Chain A, Determination Of The Solution Structures Of Domains Ii And Iii Of Protein G From Streptococcus By 1h Nmr [Taxonomy]
    • gi|109157407|pdb|2CWB|A_7:62 Chain A, Solution Structure Of The Ubiquitin-Associated Domain Of Human Bmsc-Ubp And Its Complex With Ubiquitin
    • gi|110591203|pdb|2DEN|A Chain A, Solution Structure Of The Ubiquitin-Associated Domain Of Human Bmsc-Ubp And Its Complex With Ubiquitin
    • gi|161761023|pdb|2ON8|A_1:56 Chain A, Gbeta1 Stabilization By In Vitro Evolution And Computational Design [Taxonomy]
    • gi|164519462|pdb|2ONQ|A_1:56 Chain A, Gbeta1 Stabilization By In Vitro Evolution And Computational Design [Taxonomy]
    • gi|157833481|pdb|1PGX|A_14:69 Chain A, The 1.66 Angstroms X-Ray Structure Of The B2 Immunoglobulin- Binding Domain Of Streptococcal Protein G And Comparison To The Nmr Structure Of The B1 Domain [Taxonomy]
    • gi|24987790|pdb|1MPE|A_1:56 Chain A, Ensemble Of 20 Structures Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987791|pdb|1MPE|B Chain B, Ensemble Of 20 Structures Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987792|pdb|1MPE|C Chain C, Ensemble Of 20 Structures Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987793|pdb|1MPE|D Chain D, Ensemble Of 20 Structures Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987819|pdb|1MVK|A Chain A, X-Ray Structure Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987820|pdb|1MVK|B Chain B, X-Ray Structure Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987821|pdb|1MVK|C Chain C, X-Ray Structure Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987822|pdb|1MVK|D Chain D, X-Ray Structure Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987823|pdb|1MVK|E Chain E, X-Ray Structure Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987824|pdb|1MVK|F Chain F, X-Ray Structure Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987825|pdb|1MVK|G Chain G, X-Ray Structure Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987826|pdb|1MVK|H Chain H, X-Ray Structure Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987827|pdb|1MVK|I Chain I, X-Ray Structure Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987828|pdb|1MVK|J Chain J, X-Ray Structure Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987829|pdb|1MVK|K Chain K, X-Ray Structure Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|24987830|pdb|1MVK|L Chain L, X-Ray Structure Of The Tetrameric Mutant Of The B1 Domain Of Streptococcal Protein G [Taxonomy]
    • gi|157831156|pdb|1GB4|A_2:57 Chain A, Hyperthermophilic Variant Of The B1 Domain From Streptococcal Protein G, Nmr, 47 Structures [Taxonomy]
    • gi|24159073|pdb|1MI0|A_10:65 Chain A, Crystal Structure Of The Redesigned Protein G Variant Nug2 [Taxonomy]
    • gi|24159074|pdb|1MI0|B Chain B, Crystal Structure Of The Redesigned Protein G Variant Nug2 [Taxonomy]
    • gi|24159072|pdb|1MHX|A_10:65 Chain A, Crystal Structures Of The Redesigned Protein G Variant Nug1 [Taxonomy]
    • T0499 L1d, E coli, 56 residues
                  10        20        30        40        50         
                  |         |         |         |         |         
   1 ...TTYKLILN.LKQAKEEAIKEAVDAGTAEKYFKLIANAKTVEGVWTYKDEIKTFTVTE...
   2 ...MQYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE...
   3 ...MQYKLILN.GKTLKGETTTEAVDAATAEKVFKQYFNDNGVDGEWTYDDATKTFTVTE...
   4 ...MQYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE...
   5 ...TTYKLVIN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE...
   6 ...MTYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE...
   7 ...MQYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEsge
   8 ...MQYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEgsh
   9 ...MQYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEgsh
  10 ...-TYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE...
  11 ...MTYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDAATKTFTVTE...
  12 ...MQYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEgsm
  13 m..TTFKLIIN.GKTLKGETTTEAVDAATAEKVFKQYANDNGIDGEWTYDDATKTFTVTE...
  14 pavTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE...
  15 pavTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE...
  16 pavTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE...
  17 pavTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE...
  18 ...-TYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT-...
  19 pktDTYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEkpe
  20 pktDTYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEkpe
  21 pktDTYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEkpe
  22 ...MQYKVILN.GKTLKGETTTEAVDAATAEKVVKQFFNDNGVDGEWTYDDATKTFTVTE...
  23 ...TTFKLIIN.GKTLKGETTTEAVDAATAEKVLKQYINDNGIDGEWTYDDATKTWTVTE...
  24 gshMQYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTYTVTEgsc
  25 ...TTYKLILN.GKTLKGETTTEAVDAETAERVFKEYAKKNGVDGEWTYDDATKTFTVTE...
  26 pavTTYKLVIN.GKTLKGETTTKAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEkpe
  27 pavTTYKLVIN.GKTLKGETTTKAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEkpe
  28 pavTTYKLVIN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEkpe
  29 pavTTYKLVIN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEkpe
  30 pavTTYKLVIN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEkpe
  31 pavTTYKLVIN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEkpe
  32 hhhHQYKLALN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEgsq
  33 epmDTYKLILN.GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEkpe
  34 m..TTYKLVIN.GKTLKGETTTKTVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTEmdp
  35 pavTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTEide
  36 pavTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTEm..
  37 ...MQFKLIIN.GKTLKGEITLEAVDAAEAEKKFKQYANDNGIDGEWTYDDATKTFTVTE...
  38 ...MQFKLIIN.GKTLKGEITIEAVDAAEAEKFFKQYANDNGIDGEWTYDDATKTFTVTE...
  39 pavTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTEvnt
  40 pavTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTEvnt
  41 pavTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTEmvt
  42 pavTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTEmvt
  43 pavTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTEmvt
  44 pavTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTEmvt
  45 ...MQYKVILN.GKTLKGETTTEAVDAATFEKVVKQFFNDNGVDGEWTYDDATKTFTVTE...
  46 palTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANENGVDGVWTYDDATKTFTVTEmvt
  47 palTTYKLVIN.GKTLKGETTTKAVDAETAEKAFKQYANENGVDGVWTYDDATKTFTVTEmvt
  48 m..TTFKLIIN.GKTLKGEITIEAVDAAEAEKIFKQYANDNGIDGEWTYDDATKTFTVTE...
  49 palTTYKLVIN.GKTLKGETTTKAVDVETAEKAFKQYANENGVDGVWTYDDATKTFTVTEmvt
  50 palTTYKLIVK.GNTFSGETTTKAVDAETAEKAFKQYANENGVYGEWSYDDATKTFTVTEkpa
  51 palTTYKLIVK.GNTFSGETTTKAIDAATAEKEFKQYATANGVDGEWSYDDATKTFTVTEkpa
  52 palTTYKLIVK.GNTFSGETTTKAVDAETAEKAFKQYATANNVDGEWSYDDATKTFTVTEkpa
  53 palTTYKLIVK.GNTFSGETTTKAVDAETAEKAFKQYATANNVDGEWSYDDATKTFTVTEkpa
  54 hamDTYKLVIV.LNGTTFTYTTEAVDAATAEKVFKQYANDNGVDGEWTYADATKTFTVTE...
  55 hamDTYKLFIV.IGDRVVVVTTEAVDAATAEKVFKQYANDNGVDGEWTYDDAAKTFTVTE...
  56 palTTYKLIVK.GNTFSGETTTKAIDAATAEKEFKQYATANNVDGEWSYDDATKTFTVTEkpa
  57 palTTYRLVIK.GVTFSGETATKAVDAATAEQAFRQYANDNGVTGEWAYDAATKTFTVTEale
  58 palTTYKLVVK.GNTFSGETTTKAIDTATAEKEFKQYATANNVDGEWSYDDATKTFTVTEkpa
  59 palTTYKLVVK.GNTFSGETTTKAIDTATAEKEFKQYATANNVDGEWSYDDATKTFTVTEkpa
  60 palTTYKLIVK.GNTFSGETTTKAIDAATAEKEFKQYATANNVDGEWSYDYATKTFTVTEkpa
  61 palTTYRLVIK.GVTFSGETATKAVDAATAEQTFRQYANDNGITGEWAYDTATKTFTVTEale
  62 palTSYKLVIK.GATFSGETATKAVDAAVAEQTFRDYANKNGVDGVWAYDAATKTFTVTEqpv
  63 palTSYKLVIK.GATFSGETATKAVDAAVAEQTFRDYANKNGVDGVWAYDAATKTFTVTEqpv
  64 ...--------.---MKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEkpe
  65 ...-MYYLVVNkGQNAFYETLTKAVDAETARNAFIQSLKDDGVQGVWTYDDATKTFTVQA...
  66 ...TTYKLILN.LKQAKEEAIKEAVDAGTAEKYFKLIANAKTVEGVWTYKDEIKTFTVTE...