# TARGET T0499 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0499.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.77849 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.096 0.009 0.007 0.002 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.112 0.014 0.130 0.620 2 T 0.057 0.008 0.007 0.002 0.004 0.002 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.302 0.006 0.138 0.466 3 Y 0.011 0.003 0.002 0.001 0.005 0.003 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.796 0.002 0.051 0.119 4 K 0.008 0.002 0.002 0.001 0.010 0.008 0.012 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.841 0.002 0.034 0.073 5 L 0.001 0.001 0.001 0.001 0.002 0.002 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.940 0.001 0.010 0.033 6 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.004 0.006 0.004 0.943 0.001 0.008 0.024 7 L 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.008 0.006 0.006 0.928 0.001 0.008 0.027 8 N 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.007 0.003 0.005 0.006 0.009 0.007 0.687 0.001 0.063 0.195 9 L 0.005 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.004 0.006 0.005 0.005 0.007 0.005 0.006 0.645 0.003 0.078 0.213 10 K 0.014 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.003 0.002 0.003 0.002 0.002 0.002 0.164 0.006 0.215 0.575 11 Q 0.108 0.007 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.022 0.176 0.629 12 A 0.210 0.060 0.020 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.023 0.126 0.509 13 K 0.051 0.126 0.013 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.013 0.220 0.528 14 E 0.081 0.131 0.017 0.002 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.023 0.108 0.602 15 E 0.084 0.337 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.012 0.096 0.431 16 A 0.071 0.494 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.012 0.077 0.312 17 I 0.044 0.702 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.016 0.027 0.156 18 K 0.021 0.791 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.009 0.028 0.111 19 E 0.059 0.738 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.017 0.043 0.110 20 A 0.082 0.800 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.014 0.009 0.060 21 V 0.041 0.805 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.008 0.024 0.061 22 D 0.035 0.790 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.026 0.021 0.101 23 A 0.079 0.624 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.031 0.020 0.186 24 G 0.016 0.377 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.004 0.389 0.191 25 T 0.121 0.211 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.011 0.485 0.162 26 A 0.052 0.859 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.011 0.008 0.064 27 E 0.027 0.847 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.020 0.097 28 K 0.016 0.855 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.080 0.044 29 Y 0.028 0.954 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.011 30 F 0.009 0.979 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.009 31 K 0.005 0.983 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.006 32 L 0.011 0.979 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.004 33 I 0.036 0.951 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.001 0.005 34 A 0.027 0.946 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.005 0.002 0.010 35 N 0.029 0.864 0.008 0.001 0.001 0.001 0.001 0.001 0.004 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.033 0.004 0.034 36 A 0.051 0.763 0.018 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.036 0.008 0.097 37 K 0.035 0.300 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.093 0.091 0.445 38 T 0.346 0.021 0.174 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.196 0.059 0.188 39 V 0.071 0.050 0.250 0.020 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.072 0.008 0.181 0.344 40 E 0.004 0.017 0.009 0.008 0.036 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.274 0.003 0.210 0.431 41 G 0.019 0.010 0.003 0.004 0.062 0.073 0.008 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.150 0.010 0.114 0.539 42 V 0.166 0.012 0.009 0.002 0.004 0.005 0.024 0.011 0.001 0.001 0.001 0.001 0.002 0.007 0.011 0.006 0.278 0.012 0.162 0.287 43 W 0.009 0.006 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.003 0.004 0.005 0.002 0.300 0.001 0.027 0.633 44 T 0.012 0.011 0.002 0.001 0.015 0.018 0.021 0.011 0.003 0.005 0.006 0.003 0.011 0.014 0.012 0.006 0.355 0.004 0.150 0.338 45 Y 0.012 0.013 0.001 0.001 0.001 0.002 0.003 0.002 0.027 0.009 0.016 0.004 0.010 0.007 0.004 0.006 0.335 0.006 0.085 0.456 46 K 0.012 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.264 0.003 0.125 0.565 47 D 0.049 0.018 0.002 0.001 0.001 0.001 0.001 0.001 0.012 0.003 0.003 0.001 0.002 0.001 0.001 0.001 0.132 0.028 0.303 0.443 48 E 0.265 0.027 0.004 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.158 0.024 0.141 0.373 49 I 0.094 0.122 0.015 0.002 0.002 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.205 0.024 0.196 0.329 50 K 0.118 0.044 0.017 0.004 0.011 0.007 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.465 0.029 0.108 0.188 51 T 0.040 0.045 0.014 0.002 0.005 0.003 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.134 0.008 0.065 0.672 52 F 0.027 0.014 0.006 0.002 0.006 0.004 0.008 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.003 0.721 0.006 0.047 0.145 53 T 0.022 0.018 0.005 0.002 0.006 0.005 0.004 0.004 0.001 0.001 0.002 0.001 0.003 0.005 0.011 0.004 0.313 0.006 0.147 0.443 54 V 0.011 0.008 0.003 0.001 0.002 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.004 0.006 0.006 0.005 0.562 0.004 0.051 0.326 55 T 0.007 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.005 0.001 0.004 0.004 0.004 0.002 0.316 0.002 0.238 0.394 56 E 0.015 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.002 0.002 0.002 0.001 0.210 0.004 0.142 0.599