# TARGET T0499 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0499.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.77849 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.046 0.441 0.241 0.055 0.155 0.024 0.017 0.003 0.016 0.002 0.001 2 T 0.031 0.655 0.146 0.033 0.094 0.014 0.009 0.001 0.018 0.001 0.001 3 Y 0.005 0.693 0.124 0.009 0.144 0.012 0.003 0.001 0.010 0.001 0.001 4 K 0.006 0.829 0.076 0.002 0.064 0.011 0.001 0.001 0.011 0.001 0.001 5 L 0.003 0.812 0.128 0.001 0.018 0.025 0.001 0.001 0.011 0.001 0.001 6 I 0.013 0.856 0.062 0.001 0.019 0.038 0.002 0.001 0.009 0.001 0.001 7 L 0.010 0.735 0.146 0.005 0.061 0.023 0.001 0.001 0.018 0.001 0.001 8 N 0.028 0.288 0.324 0.021 0.048 0.222 0.013 0.001 0.048 0.003 0.003 9 L 0.253 0.211 0.292 0.084 0.059 0.049 0.011 0.002 0.029 0.007 0.003 10 K 0.578 0.100 0.143 0.106 0.020 0.016 0.021 0.003 0.008 0.004 0.002 11 Q 0.428 0.117 0.127 0.178 0.054 0.020 0.050 0.009 0.014 0.003 0.001 12 A 0.531 0.099 0.189 0.097 0.024 0.023 0.016 0.003 0.014 0.002 0.001 13 K 0.663 0.080 0.132 0.078 0.013 0.015 0.009 0.001 0.007 0.002 0.001 14 E 0.843 0.033 0.064 0.036 0.004 0.010 0.005 0.001 0.003 0.001 0.001 15 E 0.881 0.034 0.034 0.035 0.004 0.004 0.005 0.001 0.002 0.001 0.001 16 A 0.816 0.043 0.065 0.037 0.010 0.020 0.002 0.001 0.005 0.001 0.001 17 I 0.922 0.016 0.021 0.032 0.002 0.004 0.001 0.001 0.002 0.001 0.001 18 K 0.969 0.013 0.011 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 E 0.942 0.018 0.006 0.025 0.004 0.001 0.002 0.001 0.001 0.001 0.001 20 A 0.881 0.024 0.036 0.033 0.014 0.005 0.004 0.002 0.002 0.001 0.001 21 V 0.824 0.096 0.026 0.030 0.002 0.009 0.004 0.001 0.009 0.001 0.001 22 D 0.559 0.063 0.195 0.040 0.034 0.064 0.018 0.002 0.018 0.006 0.001 23 A 0.930 0.002 0.011 0.052 0.002 0.002 0.001 0.001 0.001 0.001 0.001 24 G 0.976 0.004 0.006 0.010 0.001 0.001 0.002 0.001 0.001 0.001 0.001 25 T 0.947 0.009 0.005 0.030 0.002 0.003 0.002 0.001 0.002 0.001 0.001 26 A 0.987 0.002 0.004 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 E 0.994 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 K 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 Y 0.990 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 F 0.985 0.001 0.002 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 K 0.993 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 L 0.985 0.003 0.002 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 I 0.916 0.010 0.015 0.051 0.002 0.002 0.001 0.001 0.003 0.001 0.001 34 A 0.844 0.019 0.033 0.080 0.004 0.006 0.006 0.001 0.006 0.001 0.001 35 N 0.517 0.021 0.044 0.321 0.017 0.017 0.045 0.006 0.008 0.005 0.001 36 A 0.726 0.029 0.053 0.147 0.006 0.005 0.020 0.006 0.006 0.002 0.001 37 K 0.236 0.025 0.042 0.497 0.008 0.009 0.167 0.009 0.005 0.001 0.001 38 T 0.031 0.049 0.072 0.080 0.035 0.016 0.631 0.075 0.007 0.004 0.001 39 V 0.017 0.352 0.554 0.016 0.008 0.043 0.001 0.001 0.008 0.001 0.001 40 E 0.083 0.286 0.322 0.254 0.006 0.029 0.008 0.001 0.009 0.001 0.001 41 G 0.013 0.111 0.059 0.014 0.642 0.024 0.019 0.076 0.006 0.035 0.001 42 V 0.023 0.787 0.094 0.005 0.064 0.016 0.002 0.001 0.008 0.001 0.001 43 W 0.010 0.570 0.254 0.010 0.106 0.029 0.002 0.001 0.018 0.001 0.001 44 T 0.022 0.645 0.120 0.026 0.100 0.043 0.003 0.001 0.040 0.001 0.001 45 Y 0.068 0.496 0.210 0.029 0.116 0.035 0.006 0.001 0.036 0.003 0.001 46 K 0.449 0.173 0.177 0.127 0.013 0.027 0.018 0.001 0.012 0.001 0.003 47 D 0.357 0.110 0.091 0.147 0.083 0.014 0.142 0.027 0.021 0.007 0.001 48 E 0.458 0.140 0.196 0.125 0.018 0.020 0.029 0.003 0.010 0.001 0.001 49 I 0.144 0.263 0.199 0.323 0.019 0.022 0.019 0.001 0.010 0.001 0.001 50 K 0.180 0.373 0.188 0.073 0.095 0.025 0.039 0.005 0.019 0.003 0.001 51 T 0.025 0.588 0.196 0.058 0.086 0.022 0.009 0.001 0.015 0.001 0.001 52 F 0.016 0.628 0.148 0.015 0.154 0.024 0.003 0.001 0.011 0.001 0.001 53 T 0.011 0.680 0.187 0.007 0.042 0.045 0.004 0.001 0.025 0.001 0.001 54 V 0.038 0.701 0.154 0.007 0.016 0.067 0.004 0.001 0.013 0.001 0.001 55 T 0.106 0.528 0.177 0.050 0.061 0.048 0.007 0.001 0.021 0.001 0.001 56 E 0.112 0.457 0.209 0.042 0.084 0.032 0.021 0.001 0.039 0.002 0.001