# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	1.55e-11	d.15.7.1	37821
2on8A	56	1.75e-11		
2igd	61	1.83e-11		
2gi9A	56	2.80e-11		
2qmtA	56	2.82e-11		
2b7eA	59	1.637		
1cvrA	435	10.17	b.1.18.12,c.17.1.2	21949,31006
1ql3A	99	24.16	a.3.1.1	15822
1v2yA	105	25.77	d.15.1.1	100275
2qklA	127	26.81		
1qn2A	100	29.36	a.3.1.1	15882
1sc3A	178	31.81	c.17.1.1	105416
2f6eA	127	35.55		
1krnA	88	37.55	g.14.1.1	44629
3cjsA	60	38.77		
1i71A	83	39.27	g.14.1.1	61864
2q00A	129	42.00		
1x2gA	337	42.67		
1qx2A	76	43.28	a.39.1.1	104622
2d1pA	140	44.06	c.114.1.1	131136
1pchA	88	49.15	d.94.1.1	40564
2qsbA	89	49.93		
2qzgA	94	54.28		
2pwwA	127	59.24		
2ek8A	421	64.40		
1nl1A	147	65.33	g.14.1.1,g.32.1.1	91949,91950
5hpgA	84	65.90	g.14.1.1	44642
2cruA	118	68.14	a.5.6.1	130742
2arfA	165	72.85		
1hz6A	72	76.54	d.15.7.1	61429
1gxmA	332	79.97	a.102.5.1	76371
1vf8A	377	80.43	c.1.8.5,d.26.3.1	120029,120030
2nx9A	464	82.44		
2e5aA	347	83.00		
1axhA	37	83.70	g.3.6.2	44109
1e9lA	377	84.72	c.1.8.5,d.26.3.1	59395,59396
2pn1A	331	85.32		
1wdcC	156	85.45	a.39.1.5	17317
2v05A	311	85.84		
1ydnA	295	89.73