# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	1.52e-12	d.15.7.1	37821
2igd	61	1.82e-12		
2on8A	56	1.82e-12		
2qmtA	56	2.70e-12		
2gi9A	56	2.73e-12		
2b7eA	59	1.431		
1cvrA	435	6.419	b.1.18.12,c.17.1.2	21949,31006
1v2yA	105	15.83	d.15.1.1	100275
2q00A	129	21.52		
1krnA	88	22.22	g.14.1.1	44629
1i71A	83	26.55	g.14.1.1	61864
1ql3A	99	29.30	a.3.1.1	15822
2f6eA	127	29.83		
5hpgA	84	35.27	g.14.1.1	44642
1nl1A	147	35.36	g.14.1.1,g.32.1.1	91949,91950
1x2gA	337	38.48		
1qx2A	76	38.68	a.39.1.1	104622
1qn2A	100	41.61	a.3.1.1	15882
3cjsA	60	42.63		
1gxmA	332	42.76	a.102.5.1	76371
2pwwA	127	44.05		
2qsbA	89	45.14		
1sc3A	178	47.26	c.17.1.1	105416
2qzgA	94	47.73		
2pn1A	331	50.96		
2d1pA	140	56.28	c.114.1.1	131136
2f15A	96	63.69		
2v05A	311	64.09		
4ubpA	101	65.70	d.8.1.1	37352
2nvnA	122	67.86	d.18.1.3	138633
1pchA	88	70.31	d.94.1.1	40564
2arfA	165	71.91		
2b30A	301	72.92	c.108.1.10	127759
1m7vA	363	77.99	d.174.1.1	78748
1ym0B	27	81.06		
2e5aA	347	85.62		
2qklA	127	87.17		
1aisB	200	88.63	a.74.1.2,a.74.1.2	18384,18385