# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	9.52e-15	d.15.7.1	37821
2on8A	56	1.17e-14		
2igd	61	1.18e-14		
2qmtA	56	1.73e-14		
2gi9A	56	2.26e-14		
2b7eA	59	0.3902		
1v2yA	105	1.821	d.15.1.1	100275
3cjsA	60	5.097		
1ql3A	99	5.703	a.3.1.1	15822
1cvrA	435	6.748	b.1.18.12,c.17.1.2	21949,31006
1qn2A	100	8.036	a.3.1.1	15882
1krnA	88	9.367	g.14.1.1	44629
1d3cA	686	10.12	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
1i71A	83	17.00	g.14.1.1	61864
2vpjA	301	20.48		
1nl1A	147	22.03	g.14.1.1,g.32.1.1	91949,91950
1x2gA	337	24.70		
2uvkA	357	30.62		
2f6eA	127	34.58		
2gwgA	350	34.86	c.1.9.15	135805
5hpgA	84	36.53	g.14.1.1	44642
2pi6A	361	38.65		
1cxcA	124	39.04	a.3.1.1	15890
1vf8A	377	45.62	c.1.8.5,d.26.3.1	120029,120030
2d1pA	140	46.30	c.114.1.1	131136
1uzcA	71	46.58	a.159.2.1	100222
1sc3A	178	46.71	c.17.1.1	105416
1e9lA	377	48.11	c.1.8.5,d.26.3.1	59395,59396
2ffgA	87	48.51	d.317.1.1	133383
1wr8A	231	49.64	c.108.1.10	114836
1qx2A	76	49.95	a.39.1.1	104622
2i7hA	189	50.91		
2oieA	111	52.55	a.204.1.2	139092
1zgkA	308	52.77		
2pn1A	331	53.49		
1wnyA	186	53.76		
2arfA	165	54.17		
3cu5A	141	58.14		
1h4xA	117	58.65	c.13.2.1	60626
1vydA	116	59.22	a.3.1.1	108900
2f15A	96	60.35		
2bh4X	134	60.75		
2pwwA	127	61.68		
2f68X	313	62.80		
2i9aA	145	64.16	g.3.11.1,g.14.1.1	137110,137111
1vkwA	218	64.65	d.90.1.2	108695
2b12B	108	65.84		
1a0hA	159	66.04	b.47.1.2,g.14.1.1	26229,44655
1cnoA	87	66.07	a.3.1.1	15814
2q00A	129	66.31		
1pchA	88	66.34	d.94.1.1	40564
2cruA	118	66.43	a.5.6.1	130742
2b0zB	108	67.15		
2qklA	127	67.28		
1udzA	182	68.88	b.51.1.1	99239
2e1nA	138	70.51		
1aisB	200	72.22	a.74.1.2,a.74.1.2	18384,18385
3tglA	269	72.88	c.69.1.17	34733
2dcfA	392	73.17		
1uwdA	103	74.35	d.52.8.2	113447
1zpvA	91	75.03	d.58.18.7	125475
1h8gA	95	75.55	b.109.1.1	65735
1z0mA	96	76.50		
2v05A	311	76.57		
2ifxA	114	76.90		
1z0nA	96	77.48		
2nx9A	464	77.65		
1uilA	113	77.87	d.50.1.1	113255
1pamA	686	79.94	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21846,22515,27753,28740
2e5aA	347	80.27		
1h4rA	314	81.11	a.11.2.1,b.55.1.5,d.15.1.4	65616,65617,65618
2dqlA	115	85.29		
2jvuA	104	86.32		
2jt1A	77	87.34		
1a9xA	1058	88.35	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
2b30A	301	89.50	c.108.1.10	127759