# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	6.61e-11	d.15.7.1	37821
2igd	61	7.54e-11		
2on8A	56	7.95e-11		
2qmtA	56	8.02e-11		
2gi9A	56	9.62e-11		
2b7eA	59	0.7483		
1cvrA	435	8.159	b.1.18.12,c.17.1.2	21949,31006
1v2yA	105	24.95	d.15.1.1	100275
2q00A	129	25.31		
2f6eA	127	30.10		
1krnA	88	30.31	g.14.1.1	44629
2qklA	127	30.83		
1i71A	83	34.96	g.14.1.1	61864
2qsbA	89	41.24		
1pchA	88	41.93	d.94.1.1	40564
1ql3A	99	44.22	a.3.1.1	15822
1nl1A	147	48.73	g.14.1.1,g.32.1.1	91949,91950
1sc3A	178	48.95	c.17.1.1	105416
1qn2A	100	49.42	a.3.1.1	15882
2qzgA	94	49.80		
2d1pA	140	50.11	c.114.1.1	131136
5hpgA	84	53.88	g.14.1.1	44642
2vpjA	301	60.14		
2arfA	165	60.39		
1qx2A	76	61.43	a.39.1.1	104622
1wdcC	156	71.23	a.39.1.5	17317
1e9lA	377	72.75	c.1.8.5,d.26.3.1	59395,59396
2ek8A	421	73.93		
2v05A	311	76.27		
2pwwA	127	77.60		
2jc4A	256	78.31		
1zbdB	134	81.98	g.50.1.1	45359
3cu5A	141	82.60		
1kpsB	171	83.12	a.118.12.1	68787
1zoxA	113	83.24		
3cjsA	60	83.74		
1q1uA	144	88.70	b.42.1.1	95608
2ffgA	87	88.75	d.317.1.1	133383
1ydnA	295	89.41