# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	8.14e-10	d.15.7.1	37821
2igd	61	8.90e-10		
2on8A	56	9.81e-10		
2qmtA	56	9.82e-10		
2gi9A	56	1.21e-09		
2b7eA	59	0.7553		
1cvrA	435	11.03	b.1.18.12,c.17.1.2	21949,31006
2q00A	129	15.56		
1v2yA	105	18.29	d.15.1.1	100275
1krnA	88	28.81	g.14.1.1	44629
2qklA	127	30.71		
1qn2A	100	32.23	a.3.1.1	15882
1ql3A	99	34.95	a.3.1.1	15822
2f6eA	127	35.02		
1i71A	83	35.64	g.14.1.1	61864
2d1pA	140	39.71	c.114.1.1	131136
1nl1A	147	40.51	g.14.1.1,g.32.1.1	91949,91950
2qsbA	89	43.34		
3cjsA	60	44.10		
2ffgA	87	48.41	d.317.1.1	133383
2qzgA	94	48.72		
5hpgA	84	48.73	g.14.1.1	44642
1pchA	88	52.40	d.94.1.1	40564
1qx2A	76	58.67	a.39.1.1	104622
1sc3A	178	62.48	c.17.1.1	105416
2e5aA	347	62.71		
1zoxA	113	66.30		
2pn1A	331	66.83		
2ek8A	421	71.66		
2cruA	118	71.82	a.5.6.1	130742
2hy5A	130	73.06	c.114.1.1	136865
2pwwA	127	73.56		
1r1hA	696	74.30	d.92.1.4	104756
2vpjA	301	74.37		
1ydnA	295	78.81		
1e9lA	377	78.92	c.1.8.5,d.26.3.1	59395,59396
2jt1A	77	86.14		
1cxcA	124	86.36	a.3.1.1	15890
2f15A	96	88.56		
1a9xA	1058	88.98	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503