# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	7.23e-10	d.15.7.1	37821
2igd	61	8.08e-10		
2on8A	56	8.13e-10		
2qmtA	56	8.92e-10		
2gi9A	56	1.06e-09		
2b7eA	59	0.9075		
1cvrA	435	10.39	b.1.18.12,c.17.1.2	21949,31006
2q00A	129	23.39		
1v2yA	105	26.10	d.15.1.1	100275
1krnA	88	28.61	g.14.1.1	44629
2qklA	127	29.20		
1i71A	83	34.30	g.14.1.1	61864
2f6eA	127	37.20		
1nl1A	147	40.32	g.14.1.1,g.32.1.1	91949,91950
2qsbA	89	40.94		
1qn2A	100	44.18	a.3.1.1	15882
1pchA	88	47.68	d.94.1.1	40564
2qzgA	94	49.07		
1ql3A	99	50.48	a.3.1.1	15822
3cjsA	60	50.50		
5hpgA	84	51.22	g.14.1.1	44642
2ffgA	87	51.51	d.317.1.1	133383
2d1pA	140	55.07	c.114.1.1	131136
1zoxA	113	59.49		
1sc3A	178	63.19	c.17.1.1	105416
1qx2A	76	64.69	a.39.1.1	104622
2pn1A	331	65.55		
1e9lA	377	66.48	c.1.8.5,d.26.3.1	59395,59396
2ek8A	421	67.85		
2vpjA	301	74.28		
2pwwA	127	74.61		
2hy5A	130	75.04	c.114.1.1	136865
2e5aA	347	78.46		
2jc4A	256	79.09		
1a9xA	1058	79.40	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
1r1hA	696	80.88	d.92.1.4	104756
1ydnA	295	81.84		
2jt1A	77	82.05		
2f15A	96	85.57		
2cruA	118	85.72	a.5.6.1	130742
2v05A	311	85.99		
1hz6A	72	88.07	d.15.7.1	61429