# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	6.62e-09	d.15.7.1	37821
2igd	61	8.00e-09		
2on8A	56	8.17e-09		
2qmtA	56	8.53e-09		
2gi9A	56	9.12e-09		
2b7eA	59	1.625		
1cvrA	435	3.471	b.1.18.12,c.17.1.2	21949,31006
2qzgA	94	24.10		
1pchA	88	28.11	d.94.1.1	40564
2qsbA	89	28.12		
1qn2A	100	28.12	a.3.1.1	15882
1ql3A	99	31.06	a.3.1.1	15822
3cu5A	141	31.86		
1v2yA	105	43.51	d.15.1.1	100275
1qx2A	76	51.62	a.39.1.1	104622
1e29A	135	53.49	a.3.1.1	59161
1fioA	196	57.26	a.47.2.1	17773
1cxcA	124	58.41	a.3.1.1	15890
1ptfA	88	60.43	d.94.1.1	40549
1qqfA	277	61.59	a.102.4.4	18875
1ae9A	179	62.24	d.163.1.1	42153
1zpvA	91	66.52	d.58.18.7	125475
2bh4X	134	69.68		
3co4A	312	75.13		
2d00A	109	77.69		
2dsjA	423	80.55		
4ubpA	101	81.79	d.8.1.1	37352
1oxkB	134	83.10	c.23.1.1	93691
2pwwA	127	84.75		
1x2gA	337	85.65		
2pjkA	178	86.40		
1ejxA	100	86.44	d.8.1.1	83182
1deeG	54	89.01	a.8.1.1	16343