# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	2.99e-11	d.15.7.1	37821
2on8A	56	3.26e-11		
2igd	61	3.49e-11		
2gi9A	56	4.40e-11		
2qmtA	56	4.53e-11		
2b7eA	59	0.5835		
1cvrA	435	8.139	b.1.18.12,c.17.1.2	21949,31006
2d1pA	140	23.95	c.114.1.1	131136
1ql3A	99	25.85	a.3.1.1	15822
2qklA	127	27.55		
2q00A	129	29.04		
1sc3A	178	29.63	c.17.1.1	105416
2f6eA	127	30.65		
1x2gA	337	30.87		
1nl1A	147	42.39	g.14.1.1,g.32.1.1	91949,91950
1krnA	88	43.39	g.14.1.1	44629
1qx2A	76	44.29	a.39.1.1	104622
1v2yA	105	44.70	d.15.1.1	100275
3cjsA	60	44.88		
2i7hA	189	46.26		
2hy5A	130	47.33	c.114.1.1	136865
1pchA	88	47.74	d.94.1.1	40564
1m7vA	363	47.81	d.174.1.1	78748
1i71A	83	51.17	g.14.1.1	61864
2qsbA	89	53.36		
2v05A	311	62.44		
1gxmA	332	65.12	a.102.5.1	76371
1e9lA	377	67.84	c.1.8.5,d.26.3.1	59395,59396
2ek8A	421	68.23		
2nx9A	464	69.05		
1qn2A	100	70.62	a.3.1.1	15882
1wdcC	156	72.33	a.39.1.5	17317
1kpsB	171	73.05	a.118.12.1	68787
5hpgA	84	74.01	g.14.1.1	44642
2pn1A	331	74.18		
1z3qA	200	75.27		
2d1pB	119	75.66	c.114.1.1	131137
2cruA	118	75.75	a.5.6.1	130742
2nvnA	122	80.03	d.18.1.3	138633
2qzgA	94	80.92		
2arfA	165	80.95		
2e5aA	347	82.22		
2pwwA	127	82.61		
1vkwA	218	87.74	d.90.1.2	108695
1ptfA	88	87.95	d.94.1.1	40549
2ifxA	114	88.14		
1uzcA	71	88.22	a.159.2.1	100222