# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2igdA 61 8.54e-15 d.15.7.1 37821 2on8A 56 9.34e-15 2igd 61 1.06e-14 2gi9A 56 1.24e-14 2qmtA 56 1.41e-14 2b7eA 59 0.6821 1dfaA 454 1.630 b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 1qqcA 773 1.945 c.55.3.5,e.8.1.1 33724,43013 2pgeA 377 2.958 2qazA 128 3.531 1u55A 188 4.162 d.278.1.1 107677 1t17A 148 4.351 d.129.3.6 112215 2cmtA 172 4.454 2nsfA 261 5.058 2o09A 189 5.196 2rmcA 182 7.558 b.62.1.1 27491 1ohvA 472 8.656 c.67.1.4 93031 1ec7A 446 14.11 c.1.11.2,d.54.1.1 29218,38862 1nrwA 288 16.76 c.108.1.10 86128 1bpoA 494 17.29 a.118.1.4,b.69.6.1 19143,27670 1hufA 140 17.75 d.195.1.1 61272 2b7yA 182 18.96 2q00A 129 19.24 1ed5A 444 20.03 d.174.1.1 42530 3cncA 220 20.24 2qklA 127 20.68 1qqfA 277 20.88 a.102.4.4 18875 1nl1A 147 21.61 g.14.1.1,g.32.1.1 91949,91950 2culA 232 21.95 c.3.1.7 130813 3cpgA 282 22.47 2ob9A 130 23.13 2bm0A 691 24.43 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1pieA 419 25.01 d.14.1.5,d.58.26.7 94706,94707 2f6eA 127 25.42 2dskA 311 27.39 1ojjA 402 28.09 b.29.1.10 93130 1sz6A 249 28.37 d.165.1.1 112171 1d0cA 444 28.73 d.174.1.1 64769 1ax4A 467 29.76 c.67.1.2 34391 1oewA 329 31.05 b.50.1.2 86924 2o02A 230 31.62 1xzzA 246 32.16 1at3A 247 34.09 b.57.1.1 27021 1wdcC 156 35.48 a.39.1.5 17317 1ydnA 295 36.14 2pa7A 141 36.81 1s96A 219 37.44 c.37.1.1 98740 2yziA 138 37.65 2ozpA 345 37.87 1nwzA 125 39.82 d.110.3.1 86370 1xwwA 157 41.04 3pyp 125 41.95 2z6wA 165 42.41 1kwfA 363 42.67 a.102.1.2 73078 2v7kA 361 45.59 2nutA 769 46.25 2po3A 424 46.62 2cjjA 93 47.71 a.4.1.3 130540 3c99A 432 50.21 1hkkA 364 51.93 c.1.8.5,d.26.3.1 90634,90635 1m7vA 363 52.80 d.174.1.1 78748 1qavA 90 52.97 b.36.1.1 24777 2ek8A 421 53.24 1h09A 338 53.70 b.109.1.1,c.1.8.8 83420,83421 1wyuB 474 55.85 c.67.1.7 121453 1bvyF 191 57.45 c.23.5.1 31207 1htyA 1015 58.21 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 2furA 209 58.81 b.45.1.1 134185 1oq1A 223 59.14 b.29.1.17 93408 2z3zA 706 59.34 2jisA 515 59.91 1ve5A 311 60.79 c.79.1.1 120013 2hqyA 305 61.66 3cz8A 319 62.10 2vduB 450 62.76 2cfcA 250 63.29 1sc3A 178 64.27 c.17.1.1 105416 2jhmF 218 65.51 1w8oA 601 65.92 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2nx9A 464 66.88 1anfA 370 69.07 c.94.1.1 35776 1v93A 296 69.50 c.1.23.1 100532 2j5aA 110 71.40 2g3vA 208 71.88 2qeeA 437 72.19 2bl0C 142 73.93 2bypA 214 73.93 2qz8A 149 75.37 1cem 363 76.29 2nq5A 755 78.59 1rroA 108 79.96 a.39.1.4 17195 1awqA 164 79.98 b.62.1.1 27461 2qg7A 458 80.00 1itxA 419 81.05 c.1.8.5,d.26.3.1 71425,71426 2inpC 328 83.52 2guyA 478 85.20 b.71.1.1,c.1.8.1 135754,135755 2f68X 313 85.63 1ig8A 486 86.42 c.55.1.3,c.55.1.3 64746,64747 2o2yA 349 88.11 c.2.1.2 138894 2rerA 173 88.18 1c93A 265 89.21 c.1.8.5 28998