# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	1.17e-10	d.15.7.1	37821
2on8A	56	1.25e-10		
2igd	61	1.35e-10		
2gi9A	56	1.59e-10		
2qmtA	56	1.88e-10		
2b7eA	59	1.233		
1cvrA	435	8.175	b.1.18.12,c.17.1.2	21949,31006
2q00A	129	25.36		
1ql3A	99	25.98	a.3.1.1	15822
2d1pA	140	29.32	c.114.1.1	131136
2qklA	127	29.34		
1sc3A	178	37.57	c.17.1.1	105416
2f6eA	127	40.60		
1x2gA	337	42.37		
1nl1A	147	42.69	g.14.1.1,g.32.1.1	91949,91950
1qn2A	100	43.82	a.3.1.1	15882
2qsbA	89	46.73		
1v2yA	105	47.54	d.15.1.1	100275
1krnA	88	48.19	g.14.1.1	44629
1qx2A	76	53.85	a.39.1.1	104622
1m7vA	363	54.47	d.174.1.1	78748
1i71A	83	55.55	g.14.1.1	61864
1gxmA	332	56.44	a.102.5.1	76371
3cjsA	60	59.36		
1pchA	88	62.19	d.94.1.1	40564
3cu5A	141	62.28		
2qzgA	94	64.48		
2i7hA	189	64.63		
5hpgA	84	70.31	g.14.1.1	44642
2ek8A	421	70.36		
2hy5A	130	74.23	c.114.1.1	136865
2e5aA	347	79.88		
2arfA	165	80.66		
1d3cA	686	80.75	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
2ifxA	114	84.30		
2nx9A	464	84.55		
1e9lA	377	87.09	c.1.8.5,d.26.3.1	59395,59396
1wdcC	156	87.42	a.39.1.5	17317