# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	1.79e-11	d.15.7.1	37821
2on8A	56	2.05e-11		
2igd	61	2.09e-11		
2qmtA	56	2.93e-11		
2gi9A	56	2.99e-11		
2b7eA	59	1.592		
1cvrA	435	9.926	b.1.18.12,c.17.1.2	21949,31006
1v2yA	105	12.06	d.15.1.1	100275
2q00A	129	12.19		
1ql3A	99	26.75	a.3.1.1	15822
1qn2A	100	27.06	a.3.1.1	15882
1krnA	88	35.75	g.14.1.1	44629
2f6eA	127	38.23		
1i71A	83	41.15	g.14.1.1	61864
3cjsA	60	42.91		
2d1pA	140	48.53	c.114.1.1	131136
1nl1A	147	49.52	g.14.1.1,g.32.1.1	91949,91950
5hpgA	84	51.91	g.14.1.1	44642
1sc3A	178	53.24	c.17.1.1	105416
2qsbA	89	61.14		
2pwwA	127	68.98		
2qzgA	94	69.57		
1qx2A	76	70.41	a.39.1.1	104622
2qklA	127	70.90		
2pn1A	331	71.70		
2nx9A	464	72.72		
2vpjA	301	76.10		
1wdcC	156	77.43	a.39.1.5	17317
1pchA	88	78.62	d.94.1.1	40564
2hy5B	136	81.37	c.114.1.1	136866
1e9lA	377	84.18	c.1.8.5,d.26.3.1	59395,59396
2ffgA	87	84.61	d.317.1.1	133383
1x2gA	337	87.35		
1zoxA	113	89.79