# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	6.11e-12	d.15.7.1	37821
2igd	61	7.12e-12		
2on8A	56	7.82e-12		
2gi9A	56	1.09e-11		
2qmtA	56	1.10e-11		
2b7eA	59	0.6922		
1v2yA	105	5.364	d.15.1.1	100275
1cvrA	435	12.91	b.1.18.12,c.17.1.2	21949,31006
2q00A	129	13.56		
1qn2A	100	14.94	a.3.1.1	15882
1krnA	88	18.33	g.14.1.1	44629
1ql3A	99	19.26	a.3.1.1	15822
3cjsA	60	23.63		
2pn1A	331	26.60		
2f6eA	127	29.22		
1i71A	83	31.79	g.14.1.1	61864
1nl1A	147	34.43	g.14.1.1,g.32.1.1	91949,91950
2pwwA	127	39.83		
2f15A	96	44.75		
1sc3A	178	45.53	c.17.1.1	105416
1d3cA	686	49.92	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
5hpgA	84	50.29	g.14.1.1	44642
2uvkA	357	50.51		
2nx9A	464	52.15		
2d1pA	140	52.21	c.114.1.1	131136
2ffgA	87	58.44	d.317.1.1	133383
1e9lA	377	61.05	c.1.8.5,d.26.3.1	59395,59396
3tglA	269	62.76	c.69.1.17	34733
1z0nA	96	62.97		
2qzgA	94	63.43		
1pchA	88	64.75	d.94.1.1	40564
2qsbA	89	65.83		
1h8gA	95	66.08	b.109.1.1	65735
1qx2A	76	66.19	a.39.1.1	104622
2v05A	311	67.23		
1z0mA	96	69.09		
1x2gA	337	71.54		
1hz6A	72	74.37	d.15.7.1	61429
1cxcA	124	74.86	a.3.1.1	15890
2hy5A	130	80.70	c.114.1.1	136865
2qklA	127	81.35		
2i7hA	189	86.74		
2ux9A	69	88.46