# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	1.85e-11	d.15.7.1	37821
2on8A	56	2.08e-11		
2igd	61	2.15e-11		
2gi9A	56	3.04e-11		
2qmtA	56	3.17e-11		
2b7eA	59	0.8939		
1cvrA	435	10.93	b.1.18.12,c.17.1.2	21949,31006
1v2yA	105	16.11	d.15.1.1	100275
3cjsA	60	20.93		
1krnA	88	21.25	g.14.1.1	44629
2f6eA	127	23.35		
1i71A	83	24.14	g.14.1.1	61864
1ql3A	99	34.46	a.3.1.1	15822
2q00A	129	35.80		
1qn2A	100	40.01	a.3.1.1	15882
2d1pA	140	42.50	c.114.1.1	131136
2pn1A	331	44.78		
1pchA	88	45.74	d.94.1.1	40564
1nl1A	147	46.35	g.14.1.1,g.32.1.1	91949,91950
2vpjA	301	47.81		
1sc3A	178	49.63	c.17.1.1	105416
2f15A	96	51.76		
5hpgA	84	53.91	g.14.1.1	44642
1kpsB	171	54.74	a.118.12.1	68787
1z0nA	96	58.10		
1z0mA	96	58.30		
2pwwA	127	63.98		
2v05A	311	66.80		
1m7vA	363	72.40	d.174.1.1	78748
2qsbA	89	78.95		
1hz6A	72	81.31	d.15.7.1	61429
1zbdB	134	82.06	g.50.1.1	45359
2qklA	127	84.25		
1x2gA	337	85.16		
1qx2A	76	85.49	a.39.1.1	104622
1d3cA	686	86.34	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
1zoxA	113	86.64		
2ffgA	87	89.01	d.317.1.1	133383
1h8gA	95	89.26	b.109.1.1	65735