# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igdA	61	1.84e-12	d.15.7.1	37821
2igd	61	2.13e-12		
2on8A	56	3.12e-12		
2gi9A	56	3.43e-12		
2qmtA	56	3.59e-12		
2b7eA	59	1.580		
2qklA	127	4.064		
1cvrA	435	11.00	b.1.18.12,c.17.1.2	21949,31006
1sc3A	178	22.23	c.17.1.1	105416
1umpA	631	28.55	a.102.4.2,a.102.4.2	99619,99620
1v2yA	105	29.22	d.15.1.1	100275
2qzgA	94	31.80		
1x2gA	337	32.51		
1qn2A	100	33.96	a.3.1.1	15882
2qsbA	89	38.51		
2q00A	129	40.26		
1v0jA	399	42.50		
1q1uA	144	48.13	b.42.1.1	95608
2d1pA	140	52.84	c.114.1.1	131136
1ql3A	99	53.37	a.3.1.1	15822
1dqgA	135	55.25	b.42.2.2	25579
1e29A	135	57.22	a.3.1.1	59161
2czdA	208	58.13	c.1.2.3	131045
1pchA	88	65.82	d.94.1.1	40564
1aisB	200	73.81	a.74.1.2,a.74.1.2	18384,18385
1shsA	147	76.35	b.15.1.1	23675
2f6eA	127	77.24		
1qx2A	76	79.61	a.39.1.1	104622
2nvnA	122	79.66	d.18.1.3	138633
3cjsA	60	83.49		
1zoxA	113	86.70