# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2on8A 56 3.65e-09 2qmtA 56 3.77e-09 2igdA 61 3.82e-09 d.15.7.1 37821 2gi9A 56 3.84e-09 2igd 61 4.88e-09 1ysjA 404 2.930 c.56.5.4,d.58.19.1 123975,123976 2ozzA 231 6.237 1lfwA 470 7.734 c.56.5.4,d.58.19.1 77942,77943 1fohA 664 11.87 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1fx3A 169 13.68 d.33.1.1 38524 3c5iA 369 14.66 1sqeA 109 15.01 d.58.4.5 105908 1louA 101 15.83 d.58.14.1 39323 2gqpA 236 16.14 d.122.1.1 135513 1zpvA 91 18.75 d.58.18.7 125475 3c19A 186 20.17 2afwA 329 20.40 c.56.5.8 126707 1vgyA 393 23.94 c.56.5.4,d.58.19.1 100620,100621 1vmbA 140 26.36 d.58.14.1 113672 1d0iA 156 27.65 c.23.13.1 31383 1mwqA 101 28.45 d.58.4.7 91481 2nqtA 352 29.45 1s7iA 124 35.26 d.58.4.9 105353 1xs5A 241 38.70 c.94.1.1 115912 1gtzA 156 40.48 c.23.13.1 70539 2nyiA 195 40.65 3bt7A 369 44.89 1rm4A 337 45.51 c.2.1.3,d.81.1.1 105000,105001 1cqmA 101 45.68 d.58.14.1 39321 2uubJ 105 47.29 d.58.15.1 139941 2pa2A 151 48.36 1gadO 330 50.07 c.2.1.3,d.81.1.1 29950,39865 2joeA 139 50.71 1p99A 295 50.87 c.94.1.1 94384 1wj9A 211 54.37 d.58.53.1,d.58.53.1 114694,114695 1cvrA 435 55.03 b.1.18.12,c.17.1.2 21949,31006 1ccrA 111 56.68 a.3.1.1 15877 1p2zA 968 57.08 b.121.2.2,b.121.2.2 93962,93963 1peaA 385 57.40 c.93.1.1 35662 1htp 131 58.09 1qx2A 76 59.67 a.39.1.1 104622 1v9jA 113 61.12 d.52.6.1 100542 1vr7A 142 61.47 d.156.1.2 120443 1fnoA 417 62.70 d.58.19.1,c.56.5.4 70145,75841 1x2gA 337 65.90 2ebeA 106 68.77 1p30A 952 68.94 b.121.2.2,b.121.2.2 93964,93965 1tluA 130 69.57 d.156.1.2 107139 1gm6A 175 70.80 b.60.1.1 70272 2dkhA 639 71.34 1di6A 195 71.56 c.57.1.1 33863 1bebA 162 72.42 b.60.1.1 27115 2qazA 128 75.72 1j75A 67 76.12 a.4.5.19 62673 1dssG 333 77.21 c.2.1.3,d.81.1.1 30022,39937 1obfO 335 77.67 c.2.1.3,d.81.1.1 86768,86769 1u6lA 149 78.48 d.32.1.7 113067 2iruA 303 78.70 1f3vA 179 78.81 d.58.22.1 39382 1koe 172 79.09 2e1bA 216 80.80 1z2lA 423 81.62 c.56.5.4,d.58.19.1 124383,124384 1k3tA 359 82.18 c.2.1.3,d.81.1.1 72022,72023 1vloA 381 82.61 b.44.2.1,d.250.1.1 108838,108839 2hiqA 113 82.95 d.58.4.12 136529 1gnkA 112 82.97 d.58.5.1 39073 2d56A 53 83.07 1koeA 172 85.37 d.169.1.5 42448 1oaiA 59 86.19 a.5.2.3 81255 2aiuA 105 87.12 2b4rO 345 87.40 c.2.1.3,d.81.1.1 127845,127846 1u8fO 335 87.96 c.2.1.3,d.81.1.1 119626,119627 2b4zA 104 88.25 1yccA 108 89.79 a.3.1.1 15834