PFRMAT RR TARGET T0499 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplccrr.th62.17.730_47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 TTYKLILNLKQAKEEAIKEAVDAGTAEKYFKLIANAKTVEGVWTYKDEIK TFTVTE 4 13 0 8 0.162153 4 14 0 8 0.098647 4 15 0 8 0.081179 4 16 0 8 0.142926 4 17 0 8 0.154012 4 18 0 8 0.0856157 4 19 0 8 0.143232 4 20 0 8 0.118767 4 21 0 8 0.117772 4 23 0 8 0.0819951 4 25 0 8 0.0684155 4 26 0 8 0.109056 4 29 0 8 0.135254 4 30 0 8 0.132287 4 33 0 8 0.110474 4 34 0 8 0.101086 4 39 0 8 0.0492174 4 40 0 8 0.0596391 4 41 0 8 0.0548969 4 42 0 8 0.0826222 4 43 0 8 0.0774229 4 44 0 8 0.0951612 4 45 0 8 0.0924955 4 46 0 8 0.0798679 4 47 0 8 0.0511257 4 48 0 8 0.0553937 4 49 0 8 0.0767877 4 50 0 8 0.0592308 4 51 0 8 0.128539 4 52 0 8 0.137979 4 53 0 8 0.110046 5 14 0 8 0.0640792 5 15 0 8 0.0887755 5 16 0 8 0.157155 5 17 0 8 0.177789 5 18 0 8 0.0806025 5 19 0 8 0.0779634 5 20 0 8 0.213321 5 21 0 8 0.250466 5 23 0 8 0.12723 5 25 0 8 0.0800465 5 26 0 8 0.17102 5 29 0 8 0.159223 5 30 0 8 0.23602 5 33 0 8 0.137694 5 34 0 8 0.142824 5 39 0 8 0.0825672 5 40 0 8 0.0403913 5 41 0 8 0.0624642 5 42 0 8 0.0728546 5 43 0 8 0.1298 5 44 0 8 0.114381 5 45 0 8 0.139267 5 46 0 8 0.053377 5 47 0 8 0.0468627 5 48 0 8 0.0458325 5 49 0 8 0.0739625 5 50 0 8 0.0707604 5 51 0 8 0.152627 5 52 0 8 0.282114 5 53 0 8 0.121954 6 15 0 8 0.0479378 6 16 0 8 0.168903 6 17 0 8 0.275223 6 18 0 8 0.0532695 6 19 0 8 0.100342 6 20 0 8 0.163228 6 21 0 8 0.244547 6 23 0 8 0.0665685 6 25 0 8 0.0451738 6 26 0 8 0.134487 6 29 0 8 0.237875 6 30 0 8 0.182738 6 33 0 8 0.186478 6 34 0 8 0.174791 6 39 0 8 0.0737117 6 40 0 8 0.0466537 6 41 0 8 0.04919 6 42 0 8 0.120676 6 43 0 8 0.0817588 6 44 0 8 0.0801425 6 45 0 8 0.0675447 6 46 0 8 0.0471922 6 47 0 8 0.0209095 6 48 0 8 0.0486861 6 49 0 8 0.102692 6 50 0 8 0.0434332 6 51 0 8 0.0915124 6 52 0 8 0.18829 6 53 0 8 0.068132 7 16 0 8 0.190739 7 17 0 8 0.225789 7 18 0 8 0.0549478 7 19 0 8 0.09937 7 20 0 8 0.155522 7 21 0 8 0.209256 7 22 0 8 0.0230636 7 23 0 8 0.0589939 7 25 0 8 0.0481338 7 26 0 8 0.140744 7 27 0 8 0.0762579 7 29 0 8 0.184391 7 30 0 8 0.166082 7 31 0 8 0.0829606 7 33 0 8 0.141133 7 34 0 8 0.132652 7 38 0 8 0.0581317 7 39 0 8 0.0663745 7 40 0 8 0.048125 7 41 0 8 0.0695461 7 42 0 8 0.150367 7 43 0 8 0.10861 7 44 0 8 0.0893608 7 45 0 8 0.0683311 7 46 0 8 0.0505521 7 47 0 8 0.0264108 7 48 0 8 0.0558302 7 49 0 8 0.109861 7 50 0 8 0.0568397 7 51 0 8 0.0920755 7 52 0 8 0.158284 7 53 0 8 0.065011 8 17 0 8 0.0429903 8 20 0 8 0.147576 8 21 0 8 0.107684 8 23 0 8 0.0733956 8 26 0 8 0.150947 8 29 0 8 0.0346944 8 30 0 8 0.0897092 8 33 0 8 0.0310661 8 39 0 8 0.0765188 8 40 0 8 0.0403442 8 41 0 8 0.193268 8 42 0 8 0.111773 8 43 0 8 0.177546 8 44 0 8 0.120206 8 45 0 8 0.0629646 8 46 0 8 0.0334567 8 47 0 8 0.0446251 8 48 0 8 0.0418262 8 49 0 8 0.0536952 8 50 0 8 0.111866 8 51 0 8 0.0921945 8 52 0 8 0.118107 8 53 0 8 0.0618202 9 19 0 8 0.0279404 9 20 0 8 0.053456 9 21 0 8 0.0436843 9 23 0 8 0.0276973 9 25 0 8 0.0318289 9 26 0 8 0.0656411 9 29 0 8 0.0691225 9 30 0 8 0.0410602 9 33 0 8 0.0667982 9 34 0 8 0.0438661 9 38 0 8 0.0766819 9 39 0 8 0.0515033 9 40 0 8 0.0514307 9 41 0 8 0.085086 9 42 0 8 0.100223 9 43 0 8 0.0967176 9 44 0 8 0.0758316 9 45 0 8 0.0559395 9 46 0 8 0.0662723 9 47 0 8 0.0295761 9 48 0 8 0.0937158 9 49 0 8 0.135443 9 50 0 8 0.0617707 9 51 0 8 0.0821823 9 52 0 8 0.102019 9 53 0 8 0.0611838 10 20 0 8 0.0213583 10 39 0 8 0.035209 10 41 0 8 0.0681305 10 42 0 8 0.0487633 10 43 0 8 0.0695475 10 44 0 8 0.0537223 10 45 0 8 0.0542604 10 47 0 8 0.0265406 10 48 0 8 0.0418795 10 49 0 8 0.0381341 10 50 0 8 0.0474373 10 51 0 8 0.0564029 10 52 0 8 0.0466122 11 20 0 8 0.0109489 11 41 0 8 0.0398558 11 42 0 8 0.0436699 11 43 0 8 0.0437156 11 44 0 8 0.0444267 11 45 0 8 0.0460255 11 47 0 8 0.0186624 11 48 0 8 0.03573 11 49 0 8 0.0320116 11 50 0 8 0.0262033 11 51 0 8 0.0421937 12 21 0 8 0.0336178 12 23 0 8 0.0205566 12 25 0 8 0.0202645 12 26 0 8 0.0752551 12 29 0 8 0.0443152 12 30 0 8 0.0363616 12 33 0 8 0.0450113 12 34 0 8 0.0415076 12 39 0 8 0.0567246 12 41 0 8 0.0499551 12 42 0 8 0.062201 12 43 0 8 0.0558277 12 44 0 8 0.0442063 12 45 0 8 0.059171 12 46 0 8 0.0276263 12 47 0 8 0.0206124 12 48 0 8 0.0376889 12 49 0 8 0.0352556 12 50 0 8 0.0315382 12 51 0 8 0.0511671 12 52 0 8 0.05379 12 53 0 8 0.037198 13 23 0 8 0.0148695 13 25 0 8 0.0187576 13 26 0 8 0.0668931 13 29 0 8 0.0319047 13 30 0 8 0.0248369 13 33 0 8 0.0252858 13 39 0 8 0.0393167 13 41 0 8 0.044013 13 42 0 8 0.0462572 13 43 0 8 0.0493053 13 44 0 8 0.042153 13 45 0 8 0.0510966 13 47 0 8 0.0229046 13 48 0 8 0.0363315 13 49 0 8 0.0281403 13 50 0 8 0.0327278 13 51 0 8 0.0485073 13 52 0 8 0.0418004 14 23 0 8 0.0093305 14 25 0 8 0.01267 14 26 0 8 0.0396866 14 29 0 8 0.0309456 14 30 0 8 0.01193 14 33 0 8 0.0266524 14 41 0 8 0.0278718 14 43 0 8 0.031584 14 44 0 8 0.0276106 14 45 0 8 0.0253988 14 47 0 8 0.0102947 14 48 0 8 0.0218363 14 49 0 8 0.0188493 14 50 0 8 0.0143588 14 51 0 8 0.0256825 14 52 0 8 0.023652 15 26 0 8 0.0374734 15 29 0 8 0.00839534 15 30 0 8 0.0108881 15 33 0 8 0.00814026 15 41 0 8 0.0251613 15 43 0 8 0.0285325 15 44 0 8 0.0317534 15 45 0 8 0.0300824 15 47 0 8 0.0149745 15 49 0 8 0.0119928 15 50 0 8 0.020941 15 51 0 8 0.0330135 15 52 0 8 0.0276907 16 25 0 8 0.0204374 16 26 0 8 0.0963049 16 27 0 8 0.0237189 16 29 0 8 0.0724947 16 30 0 8 0.0562756 16 31 0 8 0.0143165 16 32 0 8 0.0217903 16 33 0 8 0.0593256 16 34 0 8 0.0517571 16 39 0 8 0.0431793 16 41 0 8 0.0472003 16 42 0 8 0.0445139 16 43 0 8 0.0503941 16 44 0 8 0.039556 16 45 0 8 0.0465302 16 47 0 8 0.0195645 16 48 0 8 0.0887493 16 49 0 8 0.102062 16 50 0 8 0.0338104 16 51 0 8 0.0497481 16 52 0 8 0.0452214 16 53 0 8 0.0306016 17 26 0 8 0.124996 17 27 0 8 0.0393941 17 28 0 8 0.0115265 17 29 0 8 0.200572 17 30 0 8 0.0762007 17 31 0 8 0.0271529 17 32 0 8 0.0162504 17 33 0 8 0.1836 17 34 0 8 0.218445 17 35 0 8 0.0189816 17 36 0 8 0.0148473 17 38 0 8 0.0398163 17 39 0 8 0.0640759 17 41 0 8 0.0464138 17 42 0 8 0.0629371 17 43 0 8 0.0598486 17 44 0 8 0.042634 17 45 0 8 0.0507829 17 47 0 8 0.0166144 17 48 0 8 0.0555295 17 49 0 8 0.0727072 17 50 0 8 0.0347116 17 51 0 8 0.0577582 17 52 0 8 0.0620576 17 53 0 8 0.0333891 18 29 0 8 0.0181537 18 30 0 8 0.012193 18 33 0 8 0.0148198 18 34 0 8 0.0125043 18 39 0 8 0.017824 18 41 0 8 0.0255088 18 42 0 8 0.0343522 18 43 0 8 0.0274201 18 44 0 8 0.0281288 18 45 0 8 0.0245702 18 47 0 8 0.0123608 18 48 0 8 0.0467835 18 49 0 8 0.0364678 18 50 0 8 0.0181085 18 51 0 8 0.0283866 18 52 0 8 0.0264068 19 29 0 8 0.0227365 19 30 0 8 0.0175831 19 33 0 8 0.0197845 19 41 0 8 0.0306757 19 43 0 8 0.0326466 19 45 0 8 0.0298955 19 47 0 8 0.0140875 19 49 0 8 0.0204302 19 52 0 8 0.0258477 20 29 0 8 0.0685217 20 30 0 8 0.121191 20 31 0 8 0.0213725 20 32 0 8 0.0116099 20 33 0 8 0.0521849 20 34 0 8 0.0464173 20 39 0 8 0.0719516 20 41 0 8 0.0742928 20 42 0 8 0.0411978 20 43 0 8 0.0882308 20 44 0 8 0.0564103 20 45 0 8 0.0697527 20 47 0 8 0.0284336 20 48 0 8 0.0372828 20 49 0 8 0.0463857 20 50 0 8 0.0559093 20 51 0 8 0.0753889 20 52 0 8 0.0938288 20 53 0 8 0.0384968 21 30 0 8 0.139056 21 31 0 8 0.0162567 21 32 0 8 0.0116871 21 33 0 8 0.0491049 21 34 0 8 0.0572704 21 35 0 8 0.0117049 21 36 0 8 0.00992823 21 37 0 8 0.0174592 21 38 0 8 0.0284491 21 39 0 8 0.104127 21 41 0 8 0.0578924 21 42 0 8 0.0522109 21 43 0 8 0.0766927 21 44 0 8 0.0518178 21 45 0 8 0.0751918 21 47 0 8 0.0221715 21 48 0 8 0.0351985 21 49 0 8 0.0500174 21 50 0 8 0.0464529 21 51 0 8 0.0802519 21 52 0 8 0.115985 21 53 0 8 0.0472444 22 33 0 8 0.00691195 22 39 0 8 0.0151607 22 41 0 8 0.0340488 22 43 0 8 0.0320026 22 44 0 8 0.0272616 22 45 0 8 0.0204344 22 47 0 8 0.01001 22 49 0 8 0.00960115 22 51 0 8 0.026384 22 52 0 8 0.022857 23 32 0 8 0.00960677 23 33 0 8 0.0355443 23 34 0 8 0.0341088 23 35 0 8 0.0116264 23 36 0 8 0.00939557 23 37 0 8 0.0212952 23 39 0 8 0.10403 23 41 0 8 0.115583 23 42 0 8 0.0561801 23 43 0 8 0.123125 23 44 0 8 0.0718391 23 45 0 8 0.123355 23 47 0 8 0.0286424 23 48 0 8 0.0461345 23 49 0 8 0.048713 23 50 0 8 0.0689203 23 51 0 8 0.0683556 23 52 0 8 0.0772127 23 53 0 8 0.0390711 25 41 0 8 0.040673 25 43 0 8 0.0440005 25 45 0 8 0.0369907 26 35 0 8 0.0123749 26 36 0 8 0.0106937 26 39 0 8 0.0773694 26 41 0 8 0.0740739 26 42 0 8 0.0551719 26 43 0 8 0.100161 26 44 0 8 0.0533464 26 45 0 8 0.0706829 26 47 0 8 0.0260946 26 48 0 8 0.0333614 26 49 0 8 0.0413769 26 50 0 8 0.0622588 26 51 0 8 0.07035 26 52 0 8 0.109193 26 53 0 8 0.0427073 27 36 0 8 0.0108296 27 37 0 8 0.0232961 27 38 0 8 0.0306921 27 39 0 8 0.0248414 27 41 0 8 0.0400069 27 42 0 8 0.0552096 27 43 0 8 0.0474846 27 44 0 8 0.0411697 27 45 0 8 0.0333614 27 47 0 8 0.0164068 27 48 0 8 0.0308863 27 49 0 8 0.0277777 27 50 0 8 0.0340409 27 51 0 8 0.0531327 27 52 0 8 0.0483814 27 53 0 8 0.0371189 28 41 0 8 0.0173723 28 43 0 8 0.0198884 28 45 0 8 0.0148808 28 49 0 8 0.00936051 29 39 0 8 0.0523285 29 41 0 8 0.0423328 29 42 0 8 0.0676728 29 43 0 8 0.0619414 29 44 0 8 0.0361268 29 45 0 8 0.046907 29 47 0 8 0.013491 29 48 0 8 0.0529761 29 49 0 8 0.0633076 29 50 0 8 0.0309949 29 51 0 8 0.0400453 29 52 0 8 0.069768 30 39 0 8 0.143734 30 40 0 8 0.0294246 30 41 0 8 0.101872 30 42 0 8 0.0696713 30 43 0 8 0.164857 30 44 0 8 0.0613788 30 45 0 8 0.12056 30 47 0 8 0.0219912 30 48 0 8 0.0444431 30 49 0 8 0.066172 30 50 0 8 0.0681902 30 51 0 8 0.0887713 30 52 0 8 0.196834 30 53 0 8 0.0484459 31 40 0 8 0.0382785 31 41 0 8 0.0403686 31 42 0 8 0.0631665 31 43 0 8 0.0491775 31 44 0 8 0.0403285 31 45 0 8 0.0337381 31 47 0 8 0.0147348 31 48 0 8 0.0307315 31 49 0 8 0.0277214 31 50 0 8 0.027641 31 51 0 8 0.0454915 31 52 0 8 0.0467095 31 53 0 8 0.0297848 32 41 0 8 0.0225134 32 43 0 8 0.0282262 32 45 0 8 0.018084 32 47 0 8 0.00904237 32 49 0 8 0.0289178 32 51 0 8 0.019743 32 52 0 8 0.0247839 33 42 0 8 0.0725691 33 43 0 8 0.0857669 33 44 0 8 0.0433179 33 45 0 8 0.0567517 33 47 0 8 0.0150025 33 48 0 8 0.0517715 33 49 0 8 0.0750713 33 50 0 8 0.0391611 33 51 0 8 0.0521977 33 52 0 8 0.0822327 33 53 0 8 0.0284613 34 43 0 8 0.138106 34 44 0 8 0.0607017 34 45 0 8 0.093946 34 46 0 8 0.0342338 34 47 0 8 0.0209785 34 48 0 8 0.0772311 34 49 0 8 0.097128 34 50 0 8 0.0603343 34 51 0 8 0.0797094 34 52 0 8 0.139896 34 53 0 8 0.0425292 35 44 0 8 0.0447874 35 45 0 8 0.0380056 35 46 0 8 0.0250205 35 47 0 8 0.0177694 35 48 0 8 0.0410538 35 49 0 8 0.0335714 35 50 0 8 0.0366666 35 51 0 8 0.0493228 35 52 0 8 0.0409925 35 53 0 8 0.0287353 36 45 0 8 0.0287342 36 47 0 8 0.0138962 36 48 0 8 0.0549414 36 49 0 8 0.0455992 36 50 0 8 0.0253087 36 51 0 8 0.0367794 36 52 0 8 0.0306206 36 53 0 8 0.0257844 37 47 0 8 0.0133997 37 53 0 8 0.0358854 38 47 0 8 0.015936 38 48 0 8 0.0431627 38 49 0 8 0.036536 38 50 0 8 0.021219 38 51 0 8 0.0339162 38 52 0 8 0.0338322 38 53 0 8 0.0412394 39 48 0 8 0.0351314 39 49 0 8 0.0413675 39 50 0 8 0.03927 39 51 0 8 0.109924 39 52 0 8 0.132929 39 53 0 8 0.098498 40 49 0 8 0.094109 40 50 0 8 0.0832558 40 51 0 8 0.197059 40 52 0 8 0.173836 40 53 0 8 0.213499 41 50 0 8 0.143838 41 51 0 8 0.297873 41 52 0 8 0.304607 41 53 0 8 0.323318 42 51 0 8 0.312808 42 52 0 8 0.34414 42 53 0 8 0.310367 43 52 0 8 0.540874 43 53 0 8 0.336851 44 53 0 8 0.133737 END