# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	2.28e-13		
2on8A	56	2.51e-13		
2igdA	61	2.98e-13	d.15.7.1	37821
2qmtA	56	3.19e-13		
2gi9A	56	3.62e-13		
2b7eA	59	2.030		
1vf8A	377	5.971	c.1.8.5,d.26.3.1	120029,120030
1iktA	120	10.42	d.106.1.1	66188
1x2gA	337	17.69		
3cz6A	168	19.97		
3cjsA	60	21.53		
1uwcA	261	25.50	c.69.1.17	100101
1krnA	88	34.44	g.14.1.1	44629
1vkwA	218	38.29	d.90.1.2	108695
1fioA	196	38.30	a.47.2.1	17773
5hpgA	84	43.58	g.14.1.1	44642
1ql3A	99	48.57	a.3.1.1	15822
2f6eA	127	53.94		
1eeuA	114	54.25	b.1.1.1	20546
2v05A	311	54.70		
1ic6A	279	56.16	c.41.1.1	62257
2ifxA	114	59.35		
2h6fB	437	70.39	a.102.4.3	136186
1i71A	83	76.63	g.14.1.1	61864
2qklA	127	77.86		
2q00A	129	79.06		
1oohA	126	79.15	a.39.2.1	93383
1nl1A	147	81.60	g.14.1.1,g.32.1.1	91949,91950
12asA	330	82.89	d.104.1.1	40783
1fjgJ	105	84.64	d.58.15.1	39330
2hz5A	106	85.81		
4ubpA	101	86.95	d.8.1.1	37352
1hz6A	72	88.09	d.15.7.1	61429