# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2igd	61	4.41e-12		
2on8A	56	4.88e-12		
2igdA	61	5.52e-12	d.15.7.1	37821
2qmtA	56	5.93e-12		
2gi9A	56	6.21e-12		
2b7eA	59	1.687		
1vf8A	377	6.513	c.1.8.5,d.26.3.1	120029,120030
1uwcA	261	17.06	c.69.1.17	100101
3cz6A	168	19.01		
3cjsA	60	26.03		
1iktA	120	26.31	d.106.1.1	66188
1fioA	196	28.00	a.47.2.1	17773
1krnA	88	30.87	g.14.1.1	44629
1ql3A	99	36.08	a.3.1.1	15822
1ic6A	279	45.18	c.41.1.1	62257
5hpgA	84	48.45	g.14.1.1	44642
2q00A	129	50.80		
2f6eA	127	57.04		
1z0nA	96	57.48		
2v05A	311	62.40		
2hz5A	106	70.98		
1vkwA	218	72.21	d.90.1.2	108695
2f15A	96	76.88		
2qklA	127	79.37		
1eeuA	114	80.04	b.1.1.1	20546
1hz6A	72	81.96	d.15.7.1	61429
2ifxA	114	83.21		
1i71A	83	86.08	g.14.1.1	61864
1nl1A	147	88.62	g.14.1.1,g.32.1.1	91949,91950