# TARGET T0498 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0498.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.77508 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 T 0.097 0.009 0.007 0.002 0.002 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.148 0.013 0.131 0.581 2 T 0.044 0.008 0.007 0.002 0.004 0.003 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.322 0.006 0.145 0.451 3 Y 0.010 0.003 0.002 0.001 0.005 0.003 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.766 0.002 0.049 0.151 4 K 0.006 0.002 0.001 0.001 0.007 0.006 0.010 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.833 0.002 0.034 0.090 5 L 0.002 0.002 0.001 0.001 0.003 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.003 0.005 0.003 0.901 0.001 0.015 0.057 6 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.005 0.003 0.943 0.001 0.010 0.024 7 L 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.002 0.002 0.006 0.005 0.004 0.006 0.905 0.001 0.012 0.048 8 N 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.002 0.004 0.002 0.002 0.004 0.006 0.005 0.580 0.001 0.071 0.305 9 L 0.009 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.004 0.003 0.004 0.005 0.005 0.005 0.400 0.006 0.127 0.418 10 K 0.051 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.003 0.001 0.004 0.003 0.003 0.002 0.094 0.014 0.202 0.614 11 Q 0.081 0.011 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.009 0.196 0.648 12 A 0.137 0.083 0.014 0.002 0.004 0.001 0.001 0.001 0.003 0.003 0.002 0.002 0.002 0.001 0.001 0.001 0.079 0.018 0.181 0.467 13 K 0.057 0.183 0.009 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.016 0.162 0.520 14 E 0.077 0.150 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.028 0.097 0.604 15 E 0.101 0.322 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.015 0.105 0.420 16 A 0.071 0.511 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.012 0.082 0.293 17 I 0.043 0.692 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.018 0.027 0.165 18 K 0.025 0.794 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.011 0.024 0.111 19 E 0.073 0.728 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.020 0.042 0.109 20 L 0.091 0.787 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.015 0.009 0.067 21 V 0.040 0.784 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.055 0.008 0.028 0.070 22 D 0.031 0.775 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.024 0.025 0.116 23 A 0.077 0.627 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.030 0.022 0.184 24 G 0.014 0.362 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.004 0.425 0.176 25 T 0.121 0.200 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.011 0.517 0.141 26 A 0.049 0.866 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.011 0.008 0.060 27 E 0.023 0.856 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.021 0.090 28 K 0.013 0.847 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.098 0.037 29 Y 0.022 0.964 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.009 30 I 0.005 0.986 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 31 K 0.003 0.989 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 32 L 0.009 0.984 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.003 33 I 0.030 0.960 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.003 34 A 0.024 0.956 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.001 0.007 35 N 0.029 0.878 0.008 0.001 0.001 0.001 0.001 0.001 0.003 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.034 0.004 0.028 36 A 0.055 0.773 0.021 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.039 0.007 0.085 37 K 0.035 0.316 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.088 0.085 0.436 38 T 0.342 0.022 0.175 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.193 0.061 0.191 39 V 0.075 0.056 0.253 0.019 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.073 0.009 0.166 0.344 40 E 0.004 0.020 0.010 0.008 0.033 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.279 0.003 0.208 0.427 41 G 0.021 0.012 0.003 0.004 0.061 0.068 0.008 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.159 0.010 0.117 0.528 42 V 0.171 0.015 0.010 0.002 0.004 0.004 0.023 0.011 0.001 0.001 0.001 0.001 0.002 0.008 0.013 0.007 0.271 0.012 0.157 0.287 43 W 0.011 0.008 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.005 0.005 0.006 0.003 0.358 0.001 0.029 0.565 44 T 0.012 0.014 0.002 0.001 0.016 0.017 0.020 0.010 0.003 0.006 0.007 0.004 0.011 0.014 0.012 0.006 0.323 0.004 0.159 0.358 45 L 0.012 0.016 0.001 0.001 0.001 0.002 0.003 0.002 0.033 0.011 0.015 0.004 0.010 0.007 0.003 0.006 0.377 0.006 0.080 0.410 46 K 0.012 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.259 0.004 0.145 0.543 47 D 0.058 0.021 0.002 0.001 0.001 0.001 0.001 0.001 0.011 0.003 0.003 0.001 0.002 0.001 0.001 0.001 0.124 0.036 0.294 0.443 48 E 0.281 0.034 0.005 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.152 0.027 0.125 0.369 49 I 0.086 0.136 0.018 0.002 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.203 0.024 0.198 0.321 50 K 0.111 0.048 0.020 0.004 0.013 0.008 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.462 0.031 0.105 0.189 51 T 0.041 0.047 0.016 0.003 0.005 0.002 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.134 0.009 0.061 0.672 52 F 0.028 0.015 0.006 0.002 0.005 0.004 0.007 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.718 0.006 0.047 0.148 53 T 0.023 0.019 0.005 0.002 0.006 0.004 0.004 0.004 0.001 0.001 0.002 0.001 0.003 0.005 0.010 0.004 0.318 0.006 0.147 0.437 54 V 0.012 0.008 0.003 0.001 0.002 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.004 0.006 0.006 0.004 0.553 0.004 0.051 0.336 55 T 0.007 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.005 0.001 0.004 0.004 0.004 0.002 0.317 0.002 0.237 0.396 56 E 0.015 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.002 0.002 0.002 0.001 0.207 0.004 0.142 0.603