# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2if6A	186	11.40		
2otnA	308	42.63		
1b8iB	63	44.94	a.4.1.1	16011
1pufB	73	46.16	a.4.1.1	95132
2j5aA	110	46.70		
1w78A	422	47.60		
1h8eA	510	50.44	a.69.1.1,b.49.1.1,c.37.1.11	60738,60739,60740
1cqmA	101	53.62	d.58.14.1	39321
1f5aA	513	55.55	d.58.16.1,a.160.1.1,d.218.1.3	39337,75835,75836
1rj9A	304	60.86	a.24.13.1,c.37.1.10	97553,97554
1yrnB	83	60.91	a.4.1.1	15986
2elcA	329	63.73		
1vmbA	140	65.53	d.58.14.1	113672
1udhA	244	67.18	c.18.1.1	31015
2baa	243	71.23		
2yufA	142	71.66		
1f1uA	323	72.58	d.32.1.3,d.32.1.3	83200,83201
2df8A	325	76.70		
1z6jT	211	77.27	b.1.2.1,b.1.2.1	124527,124528
1o59A	355	78.19	b.18.1.22,b.18.1.22	92495,92496
2v3vA	723	78.26		
1ujrA	110	79.26	d.289.1.1	113258
1im5A	180	81.81	c.33.1.3	66211
2jhqA	226	82.43		
1b72B	87	83.91	a.4.1.1	16001
1c7nA	399	85.79	c.67.1.3	34413
1louA	101	87.26	d.58.14.1	39323
1fx2A	235	88.30	d.58.29.1	39430
1umdB	324	89.65	c.36.1.7,c.48.1.2	99600,99601