# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2if6A 186 4.915 2fvkA 559 5.644 b.92.1.3,c.1.9.6 134204,134205 2j5aA 110 7.237 2jheA 190 8.130 1uufA 369 8.325 b.35.1.2,c.2.1.1 100006,100007 3c9uA 342 10.80 1wp5A 323 10.93 b.68.10.1 114780 1t9bA 677 11.78 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 2iw0A 254 13.32 c.6.2.3 137737 1f9vA 347 13.57 c.37.1.9 59745 2h58A 330 13.60 1zkcA 197 14.14 b.62.1.1 125182 1xfiA 367 15.12 e.50.1.1 109584 3bkwA 243 15.41 2df8A 325 15.56 1svdA 473 15.84 c.1.14.1,d.58.9.1 119057,119058 2otnA 308 16.86 3cobA 369 17.47 2fdsA 352 17.72 c.1.2.3 133320 1oj7A 408 18.05 e.22.1.2 103971 2pyxA 526 18.23 2isnA 364 18.30 1jbwA 428 18.54 c.59.1.2,c.72.2.2 62860,62861 2e3zA 465 18.61 1r85A 379 19.88 c.1.8.3 104839 1amx 180 20.70 2hehA 387 21.15 1rpnA 335 21.60 c.2.1.2 97708 1ut8A 291 22.06 a.60.7.1,c.120.1.2 99908,99909 1gg4A 452 23.11 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2hjhA 354 23.83 3cl5A 377 23.98 1uthA 315 24.04 c.94.1.1 108032 1j7xA 302 25.28 c.14.1.2 66425 1orvA 728 25.98 b.70.3.1,c.69.1.24 87354,87355 2djkA 133 26.45 c.47.1.2 131548 1zylA 328 29.02 1amxA 180 29.05 b.2.3.1 22410 3b6uA 372 30.14 1jx2B 315 32.41 c.37.1.8 67404 1exrA 148 32.54 a.39.1.5 17299 3b9oA 440 33.96 2hziA 277 36.41 2irpA 208 39.18 2baa 243 39.76 2vpzA 765 39.84 1nvmA 345 39.88 a.5.7.1,c.1.10.5 86249,86250 1p2fA 220 40.63 a.4.6.1,c.23.1.1 87720,87721 2hk0A 309 41.37 1jqbA 351 41.38 b.35.1.2,c.2.1.1 77151,77152 1v0eA 666 42.07 b.68.1.2,b.108.1.3 113466,113467 2ftwA 521 42.58 b.92.1.3,c.1.9.6 134083,134084 1mhyD 521 43.38 a.25.1.2 16780 2gjlA 328 43.81 1t71A 281 44.06 d.159.1.9 112283 2dt4A 143 45.39 2i2cA 272 47.68 1cqmA 101 47.78 d.58.14.1 39321 1n7hA 381 48.45 c.2.1.2 80250 1vnsA 609 48.57 a.111.1.3 19061 2o0jA 385 49.45 1rqbA 539 51.34 a.5.7.2,c.1.10.5 105057,105058 1dzlA 505 51.59 b.121.6.1 23586 2olnA 397 53.14 2zctA 249 53.61 3bjsA 428 53.68 1pjr 724 54.69 1mtyD 512 56.19 a.25.1.2 16742 1p77A 272 56.67 c.2.1.7,c.58.1.5 94214,94215 1ja1A 622 57.08 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1jp4A 308 57.95 e.7.1.1 63223 3c1oA 321 59.62 1louA 101 63.69 d.58.14.1 39323 2dqrA 122 64.56 1s96A 219 64.72 c.37.1.1 98740 1pjjA 271 65.48 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1pvdA 537 65.76 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1t0bA 252 65.80 c.23.16.6 106199 1vmbA 140 66.57 d.58.14.1 113672 1vquA 374 66.93 2pcqA 283 66.93 1bjwA 382 67.84 c.67.1.1 34349 1u8fO 335 68.00 c.2.1.3,d.81.1.1 119626,119627 1spxA 278 70.41 c.2.1.2 98958 2axpA 173 70.69 c.37.1.1 127497 2z06A 252 71.28 2cvhA 220 72.21 1rkqA 282 72.83 c.108.1.10 97621 2biwA 490 72.89 1rpa 342 73.25 1t4oA 117 73.40 d.50.1.1 106425 1mixA 206 74.39 a.11.2.1,b.55.1.5 79166,79167 1bd3A 243 75.55 c.61.1.1 34098 1v5pA 126 77.47 b.55.1.1 108382 2bibA 547 80.14 b.109.1.1,d.157.1.8 128581,128582 1qhqA 140 80.26 b.6.1.1 63326 1iirA 415 80.82 c.87.1.5 62453 2q5cA 196 81.76 1qo0D 196 82.31 c.23.1.3 31125 1y5eA 169 82.65 c.57.1.1 122632 1plq 258 82.65 2gjsA 176 83.28 c.37.1.8 135287 2o11A 407 84.23 2yvwA 425 84.54 2hi4A 495 85.83 1z7bA 358 86.17 c.2.1.2 124599 1e5mA 416 86.85 c.95.1.1,c.95.1.1 58973,58974 3b47A 134 87.64 1vr5A 547 89.68 c.94.1.1 120437 1vj0A 380 89.71 b.35.1.2,c.2.1.1 100786,100787