# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ju3A	583	16.34	b.18.1.13,c.69.1.21	67300,67301
1smpI	101	28.43	b.61.2.1	27417
2b82A	211	31.32	c.108.1.12	128057
1rmwA	212	33.67		
1xd5A	112	37.03	b.78.1.1	115155
2v36A	376	40.40		
2cstA	411	40.84	c.67.1.1	34273
2idqA	105	45.29		
1b2pA	119	50.80	b.78.1.1	27998
1sfdA	105	52.73	b.6.1.1	105480
2ra6A	166	53.59		
1ev7A	317	65.03	c.52.1.9	33315
1jiwI	106	67.94	b.61.2.1	63078
2gqcA	70	77.54		
3brcA	156	78.49		
2fuvA	549	79.59		
1hllA	32	81.63	j.94.1.1	70966
1k6dA	220	83.52	c.124.1.2	72082
1nhpA	447	85.68	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
2ps5A	374	88.37