# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rmwA	212	11.79		
1smpI	101	16.35	b.61.2.1	27417
2b82A	211	22.29	c.108.1.12	128057
1ju3A	583	28.04	b.18.1.13,c.69.1.21	67300,67301
2v36A	376	31.20		
1ekgA	127	31.53	d.82.2.1	40021
2cstA	411	36.71	c.67.1.1	34273
1nhpA	447	49.42	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
2ps5A	374	54.14		
1svmA	377	55.14	c.37.1.20	112126
1nuyA	337	55.25	e.7.1.1	86213
1xd5A	112	55.37	b.78.1.1	115155
2gqcA	70	55.41		
2idqA	105	60.37		
1a0rG	65	60.38	a.137.3.1	19639
1jiwI	106	64.15	b.61.2.1	63078
1iow	306	64.83		
2ay1A	394	67.41	c.67.1.1	34357
2fuvA	549	69.71		
2giaA	195	70.96	d.18.1.4	135221
2nqoA	376	71.23	d.153.1.6	138473
2btlA	134	73.54	b.148.1.1	129154
1sfdA	105	75.57	b.6.1.1	105480
2acaA	189	86.59	d.63.1.2	126545
1t62A	166	87.37	b.122.1.4	106541
1b2pA	119	88.99	b.78.1.1	27998