# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cstA	411	6.519	c.67.1.1	34273
1rmwA	212	11.30		
2b82A	211	19.49	c.108.1.12	128057
1smpI	101	19.74	b.61.2.1	27417
2ay1A	394	23.46	c.67.1.1	34357
1ju3A	583	24.19	b.18.1.13,c.69.1.21	67300,67301
2uubT	106	26.88	a.7.6.1	139951
1nhpA	447	38.46	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
1fjgT	106	43.65	a.7.6.1	16338
2btlA	134	44.42	b.148.1.1	129154
2giaA	195	48.00	d.18.1.4	135221
1jiwI	106	51.29	b.61.2.1	63078
1ars	396	53.85		
2acaA	189	57.27	d.63.1.2	126545
1b2pA	119	58.21	b.78.1.1	27998
2ev0A	142	62.59	a.4.5.24,a.76.1.1	132413,132414
1xd5A	112	65.53	b.78.1.1	115155
1iow	306	65.55		
2idqA	105	65.77		
1svmA	377	69.70	c.37.1.20	112126
1nuyA	337	77.21	e.7.1.1	86213
1sfdA	105	79.20	b.6.1.1	105480
2fuvA	549	79.81		
1ekgA	127	81.21	d.82.2.1	40021
2bxxA	134	84.17	b.148.1.1	129446