# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ah7	245	31.27		
2dtrA	226	32.24	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1mp1A	111	35.84	a.188.1.1	91382
1rmwA	212	40.35		
2uubT	106	45.00	a.7.6.1	139951
1qqhA	144	45.02	b.91.1.1	28404
1jiwI	106	45.78	b.61.2.1	63078
2gbaA	105	46.37		
2e9qA	459	46.95		
1kb0A	677	47.04	a.3.1.6,b.70.1.1	68378,68379
1smpI	101	51.59	b.61.2.1	27417
2ex4A	241	60.42	c.66.1.42	132516
2v36A	376	60.43		
1xn5A	146	62.46	d.129.3.5	115574
2a2kA	175	64.96		
2ditA	112	67.57	d.58.7.1	131533
2ds3A	761	80.29		
2ffcA	353	81.54	c.1.2.3	133378
1uarA	285	84.24	c.46.1.2,c.46.1.2	107762,107763
2dfuA	264	85.03